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  5. Gb_18830

Gb_18830


Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 265.0)


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0000380 (LandPlants) Phylogenetic Tree(s): OG_05_0000380_tree ,
OG_06_0005882 (SeedPlants) Phylogenetic Tree(s): OG_06_0005882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18830
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
AMTR_s00092p00116010 evm_27.TU.AmTr_v1... KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G03110 No alias RNA binding;nucleic acid binding 0.03 Archaeplastida
AT5G46190 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
GSVIVT01012514001 No alias KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os06g23460.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
MA_10430861g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 Archaeplastida
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
MA_20325g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 Archaeplastida
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Pp3c14_13560V3.1 No alias RNA-binding KH domain-containing protein 0.02 Archaeplastida
Solyc01g106020.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Solyc02g067210.3.1 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida
Solyc03g034200.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Solyc03g082980.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Solyc04g077060.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.05 Archaeplastida
Solyc08g048500.3.1 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida
Solyc12g055780.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e012623_P002 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e026127_P004 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Zm00001e037033_P001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e039986_P003 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007093 mitotic cell cycle checkpoint IEP Neighborhood
BP GO:0007094 mitotic spindle assembly checkpoint IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
BP GO:0010948 negative regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0031577 spindle checkpoint IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033046 negative regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0045839 negative regulation of mitotic nuclear division IEP Neighborhood
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Neighborhood
BP GO:0045930 negative regulation of mitotic cell cycle IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051784 negative regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
BP GO:0051985 negative regulation of chromosome segregation IEP Neighborhood
BP GO:0071173 spindle assembly checkpoint IEP Neighborhood
BP GO:0071174 mitotic spindle checkpoint IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901988 negative regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
BP GO:1905819 negative regulation of chromosome separation IEP Neighborhood
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:2001251 negative regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 407 474
IPR004088 KH_dom_type_1 586 649
IPR004088 KH_dom_type_1 156 225
IPR004088 KH_dom_type_1 49 98
IPR004088 KH_dom_type_1 324 374
No external refs found!