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  5. Gb_19587

Gb_19587


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 762.0)


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19587
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AT5G12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Archaeplastida
LOC_Os02g45980.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Pp3c14_4640V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008430 selenium binding IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009690 cytokinin metabolic process IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0019139 cytokinin dehydrogenase activity IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071586 CAAX-box protein processing IEP Neighborhood
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 377 429
IPR000408 Reg_chr_condens 326 374
IPR000408 Reg_chr_condens 602 649
IPR000408 Reg_chr_condens 496 545
IPR000408 Reg_chr_condens 433 481
IPR000408 Reg_chr_condens 548 597
IPR027988 BRX_N 911 929
IPR000306 Znf_FYVE 653 719
No external refs found!