Coexpression cluster: Cluster_228 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 20.83% (30/144) 1.52 0.0 0.000137
GO:0046483 heterocycle metabolic process 25.0% (36/144) 1.19 2e-06 0.000242
GO:0070585 protein localization to mitochondrion 4.86% (7/144) 3.68 1e-06 0.000249
GO:0072655 establishment of protein localization to mitochondrion 4.86% (7/144) 3.68 1e-06 0.000249
GO:0006139 nucleobase-containing compound metabolic process 23.61% (34/144) 1.31 0.0 0.000278
GO:0044424 intracellular part 87.5% (126/144) 0.32 1e-06 0.000306
GO:0006626 protein targeting to mitochondrion 4.86% (7/144) 3.71 1e-06 0.000328
GO:0006396 RNA processing 11.11% (16/144) 1.98 3e-06 0.000471
GO:0044464 cell part 91.67% (132/144) 0.25 4e-06 0.000495
GO:0034641 cellular nitrogen compound metabolic process 25.0% (36/144) 1.11 6e-06 0.000649
GO:0006260 DNA replication 6.25% (9/144) 2.73 9e-06 0.000881
GO:0006259 DNA metabolic process 10.42% (15/144) 1.95 9e-06 0.000909
GO:0006839 mitochondrial transport 4.86% (7/144) 3.17 1.4e-05 0.001088
GO:0006725 cellular aromatic compound metabolic process 25.0% (36/144) 1.05 1.3e-05 0.001158
GO:0032259 methylation 8.33% (12/144) 2.17 1.7e-05 0.001159
GO:0043414 macromolecule methylation 8.33% (12/144) 2.17 1.7e-05 0.001159
GO:0007020 microtubule nucleation 3.47% (5/144) 3.86 2.5e-05 0.001631
GO:0016070 RNA metabolic process 13.89% (20/144) 1.47 3.5e-05 0.002199
GO:0044428 nuclear part 8.33% (12/144) 2.0 5.2e-05 0.002767
GO:0018193 peptidyl-amino acid modification 6.94% (10/144) 2.26 5e-05 0.002822
GO:0016569 covalent chromatin modification 6.94% (10/144) 2.27 4.8e-05 0.002849
GO:0018205 peptidyl-lysine modification 6.25% (9/144) 2.34 7.8e-05 0.004
GO:1901360 organic cyclic compound metabolic process 24.31% (35/144) 0.95 8.8e-05 0.004301
GO:0006325 chromatin organization 7.64% (11/144) 2.0 0.000106 0.004556
GO:0008380 RNA splicing 5.56% (8/144) 2.49 9.9e-05 0.004616
GO:0006261 DNA-dependent DNA replication 4.86% (7/144) 2.71 0.000103 0.004645
GO:0051607 defense response to virus 4.17% (6/144) 2.93 0.000144 0.005979
GO:0007276 gamete generation 2.08% (3/144) 4.65 0.000227 0.007272
GO:0006807 nitrogen compound metabolic process 31.94% (46/144) 0.72 0.000221 0.007289
GO:0031047 gene silencing by RNA 4.86% (7/144) 2.57 0.000189 0.00731
GO:0043170 macromolecule metabolic process 29.17% (42/144) 0.78 0.000206 0.007443
GO:0032501 multicellular organismal process 15.28% (22/144) 1.2 0.00022 0.007466
GO:0044260 cellular macromolecule metabolic process 24.31% (35/144) 0.89 0.000186 0.007472
GO:0016043 cellular component organization 20.14% (29/144) 1.0 0.000214 0.007503
GO:0016458 gene silencing 5.56% (8/144) 2.34 0.000201 0.007519
GO:0042023 DNA endoreduplication 3.47% (5/144) 3.11 0.000294 0.009157
GO:0044786 cell cycle DNA replication 3.47% (5/144) 3.1 0.000306 0.009288
GO:0009067 aspartate family amino acid biosynthetic process 3.47% (5/144) 3.05 0.00036 0.010634
GO:0009615 response to virus 4.17% (6/144) 2.67 0.000382 0.010995
GO:0016570 histone modification 5.56% (8/144) 2.13 0.000524 0.014707
GO:0071840 cellular component organization or biogenesis 20.14% (29/144) 0.89 0.000724 0.0198
GO:0016571 histone methylation 4.86% (7/144) 2.24 0.000758 0.02026
GO:0009640 photomorphogenesis 4.17% (6/144) 2.46 0.000834 0.020347
GO:0009066 aspartate family amino acid metabolic process 3.47% (5/144) 2.79 0.000821 0.020462
GO:0006479 protein methylation 4.86% (7/144) 2.22 0.000806 0.02056
GO:0008213 protein alkylation 4.86% (7/144) 2.22 0.000806 0.02056
GO:1901607 alpha-amino acid biosynthetic process 5.56% (8/144) 2.02 0.000878 0.020961
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity 1.39% (2/144) 5.42 0.000946 0.021236
GO:0061505 DNA topoisomerase II activity 1.39% (2/144) 5.42 0.000946 0.021236
GO:0009791 post-embryonic development 6.94% (10/144) 1.73 0.000927 0.021659
GO:0006913 nucleocytoplasmic transport 3.47% (5/144) 2.7 0.001087 0.02345
GO:0051169 nuclear transport 3.47% (5/144) 2.7 0.001087 0.02345
GO:0048609 multicellular organismal reproductive process 4.17% (6/144) 2.34 0.001274 0.02696
GO:0051276 chromosome organization 4.17% (6/144) 2.33 0.001302 0.027059
GO:0034968 histone lysine methylation 4.17% (6/144) 2.32 0.001361 0.02777
GO:0018022 peptidyl-lysine methylation 4.17% (6/144) 2.31 0.001392 0.02788
GO:0031461 cullin-RING ubiquitin ligase complex 3.47% (5/144) 2.59 0.001493 0.027924
GO:0043226 organelle 72.92% (105/144) 0.26 0.001483 0.028208
GO:0043231 intracellular membrane-bounded organelle 72.22% (104/144) 0.27 0.001461 0.028265
GO:0043229 intracellular organelle 72.92% (105/144) 0.26 0.001458 0.028704
GO:0043227 membrane-bounded organelle 72.22% (104/144) 0.27 0.001577 0.029006
GO:0000278 mitotic cell cycle 3.47% (5/144) 2.57 0.001621 0.02934
GO:0000226 microtubule cytoskeleton organization 4.17% (6/144) 2.26 0.001652 0.029429
GO:0009086 methionine biosynthetic process 2.78% (4/144) 2.97 0.001743 0.030565
GO:0009616 virus induced gene silencing 2.78% (4/144) 2.93 0.001947 0.032607
GO:0052018 modulation by symbiont of RNA levels in host 2.78% (4/144) 2.93 0.001947 0.032607
GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction 2.78% (4/144) 2.93 0.001947 0.032607
GO:0043412 macromolecule modification 14.58% (21/144) 0.98 0.002102 0.03276
GO:0032991 protein-containing complex 11.81% (17/144) 1.13 0.002053 0.032909
GO:0006555 methionine metabolic process 2.78% (4/144) 2.9 0.002092 0.033054
GO:0098586 cellular response to virus 2.78% (4/144) 2.91 0.002018 0.033305
GO:0007389 pattern specification process 4.86% (7/144) 1.99 0.002052 0.033363
GO:0006304 DNA modification 3.47% (5/144) 2.39 0.002754 0.035118
GO:0010267 production of ta-siRNAs involved in RNA interference 2.78% (4/144) 2.79 0.002744 0.03539
GO:0035821 modification of morphology or physiology of other organism 2.78% (4/144) 2.79 0.002744 0.03539
GO:0044003 modification by symbiont of host morphology or physiology 2.78% (4/144) 2.79 0.002744 0.03539
GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction 2.78% (4/144) 2.79 0.002744 0.03539
GO:0006305 DNA alkylation 3.47% (5/144) 2.42 0.002565 0.03553
GO:0006306 DNA methylation 3.47% (5/144) 2.42 0.002565 0.03553
GO:0051302 regulation of cell division 2.08% (3/144) 3.47 0.002535 0.036007
GO:0051567 histone H3-K9 methylation 3.47% (5/144) 2.42 0.002504 0.03602
GO:0061647 histone H3-K9 modification 3.47% (5/144) 2.42 0.002504 0.03602
GO:0003916 DNA topoisomerase activity 1.39% (2/144) 4.78 0.002352 0.036145
GO:0000151 ubiquitin ligase complex 3.47% (5/144) 2.44 0.002385 0.036167
GO:0008652 cellular amino acid biosynthetic process 5.56% (8/144) 1.76 0.002644 0.036173
GO:0007017 microtubule-based process 4.17% (6/144) 2.15 0.00242 0.036209
GO:0044728 DNA methylation or demethylation 3.47% (5/144) 2.4 0.00269 0.036366
GO:0010629 negative regulation of gene expression 6.25% (9/144) 1.65 0.002483 0.036656
GO:0072594 establishment of protein localization to organelle 5.56% (8/144) 1.72 0.003181 0.0401
GO:0033365 protein localization to organelle 5.56% (8/144) 1.71 0.003306 0.041218
GO:0002252 immune effector process 4.17% (6/144) 2.06 0.003371 0.04156
GO:0040029 regulation of gene expression, epigenetic 4.17% (6/144) 2.05 0.003431 0.041839
GO:0051701 interaction with host 2.78% (4/144) 2.68 0.003631 0.043808
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 2.78% (4/144) 2.67 0.00374 0.044645
GO:0016925 protein sumoylation 1.39% (2/144) 4.42 0.0039 0.046065
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 0.69% (1/144) 7.59 0.005207 0.048686
GO:0004636 phosphoribosyl-ATP diphosphatase activity 0.69% (1/144) 7.59 0.005207 0.048686
GO:0032206 positive regulation of telomere maintenance 0.69% (1/144) 7.59 0.005207 0.048686
GO:0032212 positive regulation of telomere maintenance via telomerase 0.69% (1/144) 7.59 0.005207 0.048686
GO:1904358 positive regulation of telomere maintenance via telomere lengthening 0.69% (1/144) 7.59 0.005207 0.048686
GO:0030894 replisome 0.69% (1/144) 7.59 0.005207 0.048686
GO:0042555 MCM complex 0.69% (1/144) 7.59 0.005207 0.048686
GO:0043601 nuclear replisome 0.69% (1/144) 7.59 0.005207 0.048686
GO:0033477 S-methylmethionine metabolic process 0.69% (1/144) 7.59 0.005207 0.048686
GO:0033528 S-methylmethionine cycle 0.69% (1/144) 7.59 0.005207 0.048686
GO:0019211 phosphatase activator activity 0.69% (1/144) 7.59 0.005207 0.048686
GO:0080009 mRNA methylation 0.69% (1/144) 7.59 0.005207 0.048686
GO:0004164 diphthine synthase activity 0.69% (1/144) 7.59 0.005207 0.048686
GO:0006448 regulation of translational elongation 0.69% (1/144) 7.59 0.005207 0.048686
GO:0017182 peptidyl-diphthamide metabolic process 0.69% (1/144) 7.59 0.005207 0.048686
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 0.69% (1/144) 7.59 0.005207 0.048686
GO:0018202 peptidyl-histidine modification 0.69% (1/144) 7.59 0.005207 0.048686
GO:1900247 regulation of cytoplasmic translational elongation 0.69% (1/144) 7.59 0.005207 0.048686
GO:2000765 regulation of cytoplasmic translation 0.69% (1/144) 7.59 0.005207 0.048686
GO:0006907 pinocytosis 0.69% (1/144) 7.59 0.005207 0.048686
GO:0047793 cycloeucalenol cycloisomerase activity 0.69% (1/144) 7.59 0.005207 0.048686
GO:0044422 organelle part 18.75% (27/144) 0.74 0.005282 0.048979
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_24 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_28 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_31 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_40 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_54 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_74 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_86 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_124 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_127 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_157 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_172 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_190 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_218 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_240 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_18 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_22 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_40 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_55 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_154 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_159 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_187 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_234 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_245 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_259 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_46 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_29 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.043 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_86 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_106 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_131 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_133 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_201 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_234 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_241 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_250 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_267 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_277 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_309 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_360 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_91 0.028 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_117 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_99 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_104 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_155 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_226 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_256 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_329 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_20 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_40 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_141 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.039 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_293 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_300 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_307 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_339 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_348 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_12 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_209 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_28 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_36 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_60 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_79 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_134 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_145 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_158 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_217 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_223 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_229 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_252 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_265 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_273 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_283 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_22 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_41 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_87 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_131 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_185 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_193 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_202 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_227 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_242 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_112 0.024 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_121 0.023 Archaeplastida Compare
Sequences (144) (download table)

InterPro Domains

GO Terms

Family Terms