Coexpression cluster: Cluster_146 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044436 thylakoid part 25.0% (25/100) 7.62 0.0 0.0
GO:0009521 photosystem 22.0% (22/100) 7.54 0.0 0.0
GO:0015979 photosynthesis 22.0% (22/100) 7.14 0.0 0.0
GO:0098796 membrane protein complex 24.0% (24/100) 5.79 0.0 0.0
GO:0009522 photosystem I 13.0% (13/100) 8.59 0.0 0.0
GO:0009538 photosystem I reaction center 8.0% (8/100) 8.7 0.0 0.0
GO:0032991 protein-containing complex 25.0% (25/100) 3.58 0.0 0.0
GO:0044425 membrane part 24.0% (24/100) 3.54 0.0 0.0
GO:0009523 photosystem II 9.0% (9/100) 6.87 0.0 0.0
GO:0044424 intracellular part 25.0% (25/100) 3.03 0.0 0.0
GO:0044464 cell part 25.0% (25/100) 2.97 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 7.0% (7/100) 7.05 0.0 0.0
GO:1990204 oxidoreductase complex 7.0% (7/100) 6.86 0.0 0.0
GO:0019898 extrinsic component of membrane 5.0% (5/100) 6.85 0.0 0.0
GO:0010207 photosystem II assembly 4.0% (4/100) 7.89 0.0 0.0
GO:0005575 cellular_component 26.0% (26/100) 1.95 0.0 0.0
GO:1902494 catalytic complex 7.0% (7/100) 4.5 0.0 0.0
GO:0009987 cellular process 28.0% (28/100) 1.66 0.0 0.0
GO:0044237 cellular metabolic process 24.0% (24/100) 1.67 0.0 2e-06
GO:0008152 metabolic process 29.0% (29/100) 1.28 3e-06 2.3e-05
GO:0010242 oxygen evolving activity 2.0% (2/100) 8.7 6e-06 3.1e-05
GO:0042548 regulation of photosynthesis, light reaction 2.0% (2/100) 8.7 6e-06 3.1e-05
GO:0042549 photosystem II stabilization 2.0% (2/100) 8.7 6e-06 3.1e-05
GO:0043467 regulation of generation of precursor metabolites and energy 2.0% (2/100) 8.7 6e-06 3.1e-05
GO:0010109 regulation of photosynthesis 2.0% (2/100) 8.7 6e-06 3.1e-05
GO:0034622 cellular protein-containing complex assembly 4.0% (4/100) 4.82 1.3e-05 6.7e-05
GO:0065003 protein-containing complex assembly 4.0% (4/100) 4.7 1.8e-05 8.9e-05
GO:0009055 electron transfer activity 5.0% (5/100) 3.89 2.3e-05 0.000112
GO:0051540 metal cluster binding 4.0% (4/100) 4.49 3.2e-05 0.000142
GO:0051536 iron-sulfur cluster binding 4.0% (4/100) 4.49 3.2e-05 0.000142
GO:0022607 cellular component assembly 4.0% (4/100) 4.41 3.9e-05 0.000169
GO:0043933 protein-containing complex subunit organization 4.0% (4/100) 4.4 4.1e-05 0.000173
GO:0009507 chloroplast 2.0% (2/100) 7.11 8.5e-05 0.000336
GO:0009536 plastid 2.0% (2/100) 7.11 8.5e-05 0.000336
GO:0005509 calcium ion binding 5.0% (5/100) 3.47 9.3e-05 0.000356
GO:0008150 biological_process 33.0% (33/100) 0.84 0.000337 0.001256
GO:0016043 cellular component organization 4.0% (4/100) 2.83 0.002514 0.008021
GO:0015995 chlorophyll biosynthetic process 1.0% (1/100) 8.7 0.002405 0.008058
GO:0009512 cytochrome b6f complex 1.0% (1/100) 8.7 0.002405 0.008058
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.0% (1/100) 8.7 0.002405 0.008058
GO:0015994 chlorophyll metabolic process 1.0% (1/100) 8.7 0.002405 0.008058
GO:0016491 oxidoreductase activity 9.0% (9/100) 1.64 0.002498 0.008164
GO:0071840 cellular component organization or biogenesis 4.0% (4/100) 2.66 0.003868 0.012053
GO:0016851 magnesium chelatase activity 1.0% (1/100) 7.7 0.004805 0.013996
GO:0051002 ligase activity, forming nitrogen-metal bonds 1.0% (1/100) 7.7 0.004805 0.013996
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 1.0% (1/100) 7.7 0.004805 0.013996
GO:0070069 cytochrome complex 1.0% (1/100) 6.7 0.009587 0.026763
GO:0048037 cofactor binding 6.0% (6/100) 1.74 0.009401 0.026803
GO:0046148 pigment biosynthetic process 1.0% (1/100) 6.38 0.011969 0.032732
GO:0016020 membrane 6.0% (6/100) 1.61 0.014434 0.038684
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_98 0.056 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_106 0.2 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_151 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_239 0.035 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_23 0.062 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.124 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_211 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_12 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_128 0.027 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_133 0.093 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_250 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_302 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_107 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_299 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.031 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_52 0.179 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_133 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_88 0.176 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_191 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_224 0.048 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_260 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_294 0.046 Archaeplastida Compare
Picea abies HCCA Cluster_145 0.058 Archaeplastida Compare
Picea abies HCCA Cluster_198 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_324 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_343 0.066 Archaeplastida Compare
Picea abies HCCA Cluster_456 0.079 Archaeplastida Compare
Oryza sativa HCCA Cluster_90 0.042 Archaeplastida Compare
Oryza sativa HCCA Cluster_148 0.2 Archaeplastida Compare
Oryza sativa HCCA Cluster_189 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_321 0.041 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_97 0.078 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_140 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_186 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_25 0.049 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_73 0.042 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_110 0.112 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.086 Archaeplastida Compare
Vitis vinifera HCCA Cluster_52 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_88 0.051 Archaeplastida Compare
Vitis vinifera HCCA Cluster_93 0.034 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.039 Archaeplastida Compare
Vitis vinifera HCCA Cluster_176 0.125 Archaeplastida Compare
Vitis vinifera HCCA Cluster_245 0.036 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_61 0.109 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_129 0.019 Archaeplastida Compare
Sequences (100) (download table)

InterPro Domains

GO Terms

Family Terms