AT1G10610

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0000297 (LandPlants) Phylogenetic Tree(s): OG_05_0000297_tree ,
OG_06_0002202 (SeedPlants) Phylogenetic Tree(s): OG_06_0002202_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G10610
Cluster	HCCA: Cluster_147

Target	Alias	Description	ECC score	Gene Family Method
Pp3c13_6760V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
Pp3c15_1800V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
Zm00001e018755_P001	No alias	transcription factor (bHLH). transcription factor (ICE1\|2)	0.03	Archaeplastida
Zm00001e021526_P001	No alias	transcription factor (bHLH). transcription factor (ICE1\|2)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	Neighborhood
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	Neighborhood
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Neighborhood
BP	GO:0000725	recombinational repair	IEP	Neighborhood
CC	GO:0000813	ESCRT I complex	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004532	exoribonuclease activity	IEP	Neighborhood
MF	GO:0004536	deoxyribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Neighborhood
CC	GO:0005769	early endosome	IEP	Neighborhood
CC	GO:0005770	late endosome	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006294	nucleotide-excision repair, preincision complex assembly	IEP	Neighborhood
BP	GO:0006528	asparagine metabolic process	IEP	Neighborhood
BP	GO:0006530	asparagine catabolic process	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009068	aspartate family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	Neighborhood
BP	GO:0010091	trichome branching	IEP	Neighborhood
BP	GO:0010213	non-photoreactive DNA repair	IEP	Neighborhood
BP	GO:0010332	response to gamma radiation	IEP	Neighborhood
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0017108	5'-flap endonuclease activity	IEP	Neighborhood
MF	GO:0032182	ubiquitin-like protein binding	IEP	Neighborhood
BP	GO:0033345	asparagine catabolic process via L-aspartate	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
MF	GO:0043130	ubiquitin binding	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
MF	GO:0048256	flap endonuclease activity	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025610	MYC/MYB_N	11	160
IPR011598	bHLH_dom	267	309

External Links

No external refs found!

AT1G10610

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation