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  5. Gb_41112

Gb_41112


Description : Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana (sp|q9fmq1|pp376_arath : 513.0)


Gene families : OG0016377 (Archaeplastida) Phylogenetic Tree(s): OG0016377_tree ,
OG_05_0015944 (LandPlants) Phylogenetic Tree(s): OG_05_0015944_tree ,
OG_06_0015713 (SeedPlants) Phylogenetic Tree(s): OG_06_0015713_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41112
Cluster HCCA: Cluster_175


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 274 304
IPR002885 Pentatricopeptide_repeat 377 410
IPR002885 Pentatricopeptide_repeat 417 465
IPR002885 Pentatricopeptide_repeat 696 744
IPR002885 Pentatricopeptide_repeat 486 535
IPR002885 Pentatricopeptide_repeat 206 255
IPR002885 Pentatricopeptide_repeat 556 604
IPR002885 Pentatricopeptide_repeat 311 358
IPR002885 Pentatricopeptide_repeat 766 810
IPR002885 Pentatricopeptide_repeat 626 675
IPR002885 Pentatricopeptide_repeat 142 169
IPR002885 Pentatricopeptide_repeat 175 204
No external refs found!