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  5. Zm00001e005441_P001

Zm00001e005441_P001


Description : subunit alpha of coat protein complex


Gene families : OG0002801 (Archaeplastida) Phylogenetic Tree(s): OG0002801_tree ,
OG_05_0002931 (LandPlants) Phylogenetic Tree(s): OG_05_0002931_tree ,
OG_06_0003184 (SeedPlants) Phylogenetic Tree(s): OG_06_0003184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005441_P001
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00220200 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
AT1G62020 No alias Coatomer, alpha subunit 0.19 Archaeplastida
AT2G21390 No alias Coatomer, alpha subunit 0.23 Archaeplastida
Cpa|evm.model.tig00000144.151 No alias Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Cpa|evm.model.tig00000144.152 No alias Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Cre13.g565850 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.08 Archaeplastida
GSVIVT01009813001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
Gb_09624 No alias subunit alpha of coat protein complex 0.11 Archaeplastida
Gb_15817 No alias subunit alpha of coat protein complex 0.09 Archaeplastida
LOC_Os03g50340.1 No alias subunit alpha of coat protein complex 0.17 Archaeplastida
LOC_Os03g50350.1 No alias subunit alpha of coat protein complex 0.15 Archaeplastida
LOC_Os09g04110.1 No alias subunit alpha of coat protein complex 0.18 Archaeplastida
MA_10428405g0010 No alias subunit alpha of coat protein complex 0.1 Archaeplastida
MA_10429054g0020 No alias subunit alpha of coat protein complex 0.07 Archaeplastida
MA_10429054g0030 No alias Coatomer subunit alpha-1 OS=Arabidopsis thaliana... 0.15 Archaeplastida
Mp3g00050.1 No alias subunit alpha of coat protein complex 0.14 Archaeplastida
Pp3c11_12600V3.1 No alias Coatomer, alpha subunit 0.04 Archaeplastida
Pp3c1_12990V3.1 No alias Coatomer, alpha subunit 0.11 Archaeplastida
Pp3c2_24120V3.1 No alias Coatomer, alpha subunit 0.09 Archaeplastida
Smo77651 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
Smo85610 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.09 Archaeplastida
Solyc04g080980.2.1 No alias subunit alpha of coat protein complex 0.16 Archaeplastida
Solyc07g032100.3.1 No alias subunit alpha of coat protein complex 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
BP GO:0018196 peptidyl-asparagine modification IEP Neighborhood
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 348 768
IPR010714 Coatomer_asu_C 815 1218
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 241 276
IPR001680 WD40_repeat 198 231
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 44 79
No external refs found!