AT3G17280

Description : F-box and associated interaction domains-containing protein

Gene families : OG0000467 (Archaeplastida) Phylogenetic Tree(s): OG0000467_tree ,
OG_05_0000234 (LandPlants) Phylogenetic Tree(s): OG_05_0000234_tree ,
OG_06_0000102 (SeedPlants) Phylogenetic Tree(s): OG_06_0000102_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G17280
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
AT1G11620	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G27490	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G32140	No alias	F-box family protein	0.07	Archaeplastida
AT1G54550	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G62270	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G65990	No alias	type 2 peroxiredoxin-related / thiol specific...	0.04	Archaeplastida
AT1G66490	No alias	F-box and associated interaction domains-containing protein	0.07	Archaeplastida
AT2G24510	No alias	F-box associated ubiquitination effector family protein	0.09	Archaeplastida
AT2G33655	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT2G38590	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT2G39355	No alias	No description available	0.04	Archaeplastida
AT3G03405	No alias	F-box associated ubiquitination effector family protein	0.1	Archaeplastida
AT3G04250	No alias	F-box associated ubiquitination effector family protein	0.03	Archaeplastida
AT3G13680	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT3G17320	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT3G17500	No alias	F-box family protein	0.04	Archaeplastida
AT3G17530	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT3G17540	No alias	F-box and associated interaction domains-containing protein	0.07	Archaeplastida
AT3G17560	No alias	F-box and associated interaction domains-containing protein	0.09	Archaeplastida
AT3G17570	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT3G19470	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT3G19560	No alias	F-box family protein	0.05	Archaeplastida
AT3G19880	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT3G20690	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT3G21120	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT3G21165	No alias	No description available	0.04	Archaeplastida
AT3G22350	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT3G22700	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT3G22730	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT3G22770	No alias	F-box associated ubiquitination effector family protein	0.07	Archaeplastida
AT3G22870	No alias	F-box and associated interaction domains-containing protein	0.07	Archaeplastida
AT3G24580	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT3G49520	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT4G09870	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT4G10190	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT4G10740	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT4G33290	No alias	F-box and associated interaction domains-containing protein	0.09	Archaeplastida
AT5G36730	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT5G36820	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT5G41490	No alias	F-box associated ubiquitination effector family protein	0.05	Archaeplastida
AT5G41500	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT5G41510	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT5G47300	No alias	F-box and associated interaction domains-containing protein	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
CC	GO:0000145	exocyst	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0001932	regulation of protein phosphorylation	IEP	Neighborhood
BP	GO:0001933	negative regulation of protein phosphorylation	IEP	Neighborhood
MF	GO:0003724	RNA helicase activity	IEP	Neighborhood
MF	GO:0004004	ATP-dependent RNA helicase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006446	regulation of translational initiation	IEP	Neighborhood
BP	GO:0006469	negative regulation of protein kinase activity	IEP	Neighborhood
MF	GO:0008186	RNA-dependent ATPase activity	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0009846	pollen germination	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
BP	GO:0010219	regulation of vernalization response	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0017077	oxidative phosphorylation uncoupler activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0031400	negative regulation of protein modification process	IEP	Neighborhood
BP	GO:0032204	regulation of telomere maintenance	IEP	Neighborhood
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0033673	negative regulation of kinase activity	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0042325	regulation of phosphorylation	IEP	Neighborhood
BP	GO:0042326	negative regulation of phosphorylation	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	Neighborhood
BP	GO:0043549	regulation of kinase activity	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0045786	negative regulation of cell cycle	IEP	Neighborhood
BP	GO:0045859	regulation of protein kinase activity	IEP	Neighborhood
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
BP	GO:0048442	sepal development	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
BP	GO:0048832	specification of plant organ number	IEP	Neighborhood
BP	GO:0048833	specification of floral organ number	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051338	regulation of transferase activity	IEP	Neighborhood
BP	GO:0051348	negative regulation of transferase activity	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0071901	negative regulation of protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0080120	CAAX-box protein maturation	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	3	47
IPR006527	F-box-assoc_dom_typ1	197	373

External Links

No external refs found!

AT3G17280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation