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  5. AT1G13400

AT1G13400 (JGL, NUB)


Aliases : JGL, NUB

Description : C2H2 and C2HC zinc fingers superfamily protein


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0003497 (SeedPlants) Phylogenetic Tree(s): OG_06_0003497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G13400
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00212840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00057p00086480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00079p00109960 evm_27.TU.AmTr_v1... Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica 0.09 Archaeplastida
AMTR_s00079p00169240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00138p00067840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00150p00049910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
AT1G10480 ZFP5 zinc finger protein 5 0.05 Archaeplastida
AT1G67030 ZFP6 zinc finger protein 6 0.03 Archaeplastida
AT1G80730 ZFP1, ATZFP1 zinc-finger protein 1 0.03 Archaeplastida
AT2G42410 ZFP11, ATZFP11 zinc finger protein 11 0.06 Archaeplastida
AT3G23130 SUP, FLO10, FON1 C2H2 and C2HC zinc fingers superfamily protein 0.04 Archaeplastida
AT5G10970 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT5G25160 ZFP3 zinc finger protein 3 0.03 Archaeplastida
AT5G27880 No alias C2H2 and C2HC zinc fingers superfamily protein 0.04 Archaeplastida
AT5G57520 ATZFP2, ZFP2 zinc finger protein 2 0.05 Archaeplastida
GSVIVT01011610001 No alias No description available 0.05 Archaeplastida
GSVIVT01011868001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01011890001 No alias Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica 0.07 Archaeplastida
GSVIVT01016493001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.07 Archaeplastida
GSVIVT01031007001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_03650 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g04120.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os02g01090.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os03g57240.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
LOC_Os04g36650.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
LOC_Os05g20930.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os08g44190.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os09g27320.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os09g38610.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_10430024g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_114098g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_57615g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Pp3c6_19230V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Smo110103 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Solyc03g117070.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc04g014540.3.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Solyc05g006310.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc05g009380.4.1 No alias Zinc finger protein JAGGED OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc06g068390.1.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Solyc09g011120.1.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc10g080600.3.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e000996_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e008019_P001 No alias C2H2 zinc finger transcription factor 0.12 Archaeplastida
Zm00001e009854_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e011910_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e013379_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e016256_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e017009_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e017030_P002 No alias Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e022212_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e023775_P002 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e025728_P002 No alias Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Zm00001e025746_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e034219_P001 No alias C2H2 zinc finger transcription factor 0.09 Archaeplastida
Zm00001e034220_P001 No alias C2H2 zinc finger transcription factor 0.09 Archaeplastida
Zm00001e034221_P001 No alias C2H2 zinc finger transcription factor 0.09 Archaeplastida
Zm00001e034883_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e040612_P001 No alias C2H2 zinc finger transcription factor 0.15 Archaeplastida
Zm00001e040940_P001 No alias C2H2 zinc finger transcription factor 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0010093 specification of floral organ identity RCA Interproscan
BP GO:0048440 carpel development IGI Interproscan
BP GO:0048440 carpel development RCA Interproscan
BP GO:0048443 stamen development IGI Interproscan
BP GO:0048653 anther development IGI Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000793 condensed chromosome IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0001708 cell fate specification IEP Neighborhood
BP GO:0002237 response to molecule of bacterial origin IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003756 protein disulfide isomerase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
CC GO:0005654 nucleoplasm IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008195 phosphatidate phosphatase activity IEP Neighborhood
BP GO:0008356 asymmetric cell division IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009798 axis specification IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:0009886 post-embryonic animal morphogenesis IEP Neighborhood
BP GO:0009887 animal organ morphogenesis IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009934 regulation of meristem structural organization IEP Neighborhood
BP GO:0009943 adaxial/abaxial axis specification IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0009946 proximal/distal axis specification IEP Neighborhood
BP GO:0009947 centrolateral axis specification IEP Neighborhood
BP GO:0009954 proximal/distal pattern formation IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010016 shoot system morphogenesis IEP Neighborhood
BP GO:0010022 meristem determinacy IEP Neighborhood
BP GO:0010051 xylem and phloem pattern formation IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
BP GO:0010074 maintenance of meristem identity IEP Neighborhood
BP GO:0010103 stomatal complex morphogenesis IEP Neighborhood
BP GO:0010154 fruit development IEP Neighborhood
BP GO:0010158 abaxial cell fate specification IEP Neighborhood
BP GO:0010159 specification of animal organ position IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010254 nectary development IEP Neighborhood
BP GO:0010338 leaf formation IEP Neighborhood
BP GO:0010434 bract formation IEP Neighborhood
BP GO:0010450 inflorescence meristem growth IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010582 floral meristem determinacy IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010865 stipule development IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019209 kinase activator activity IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
BP GO:0019827 stem cell population maintenance IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0030332 cyclin binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031540 regulation of anthocyanin biosynthetic process IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0035266 meristem growth IEP Neighborhood
BP GO:0040009 regulation of growth rate IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0045165 cell fate commitment IEP Neighborhood
BP GO:0045168 cell-cell signaling involved in cell fate commitment IEP Neighborhood
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046620 regulation of organ growth IEP Neighborhood
BP GO:0046622 positive regulation of organ growth IEP Neighborhood
MF GO:0047434 indolepyruvate decarboxylase activity IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048439 flower morphogenesis IEP Neighborhood
BP GO:0048444 floral organ morphogenesis IEP Neighborhood
BP GO:0048446 petal morphogenesis IEP Neighborhood
BP GO:0048448 stamen morphogenesis IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048455 stamen formation IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
BP GO:0048506 regulation of timing of meristematic phase transition IEP Neighborhood
BP GO:0048507 meristem development IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Neighborhood
BP GO:0048513 animal organ development IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048608 reproductive structure development IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048639 positive regulation of developmental growth IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0048859 formation of anatomical boundary IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090567 reproductive shoot system development IEP Neighborhood
BP GO:0090626 plant epidermis morphogenesis IEP Neighborhood
BP GO:0090691 formation of plant organ boundary IEP Neighborhood
BP GO:0090697 post-embryonic plant organ morphogenesis IEP Neighborhood
BP GO:0090698 post-embryonic plant morphogenesis IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:0098727 maintenance of cell number IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Neighborhood
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!