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  5. AT3G24670

AT3G24670


Description : Pectin lyase-like superfamily protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G24670
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AMTR_s00049p00173370 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AT1G04680 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G11920 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.05 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.04 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.1 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.04 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G13210 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.05 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.04 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT5G55720 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Gb_02248 No alias pectate lyase 0.02 Archaeplastida
Gb_26755 No alias pectate lyase 0.02 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.06 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.05 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.04 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.02 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10332686g0010 No alias pectate lyase 0.02 Archaeplastida
MA_103716g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.04 Archaeplastida
MA_10428603g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.04 Archaeplastida
MA_10437227g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.04 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.03 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.03 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.03 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.02 Archaeplastida
MA_474372g0010 No alias pectate lyase 0.01 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.04 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.05 Archaeplastida
MA_928735g0010 No alias pectate lyase 0.01 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.04 Archaeplastida
Mp2g24480.1 No alias pectate lyase 0.01 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.06 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.05 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc02g087670.3.1 No alias pectate lyase 0.04 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.05 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc05g014000.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.04 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0004040 amidase activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004351 glutamate decarboxylase activity IEP Neighborhood
MF GO:0004452 isopentenyl-diphosphate delta-isomerase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004737 pyruvate decarboxylase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005372 water transmembrane transporter activity IEP Neighborhood
MF GO:0005385 zinc ion transmembrane transporter activity IEP Neighborhood
BP GO:0005513 detection of calcium ion IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0006829 zinc ion transport IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0008446 GDP-mannose 4,6-dehydratase activity IEP Neighborhood
BP GO:0009267 cellular response to starvation IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0009749 response to glucose IEP Neighborhood
MF GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity IEP Neighborhood
BP GO:0009991 response to extracellular stimulus IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010053 root epidermal cell differentiation IEP Neighborhood
BP GO:0010106 cellular response to iron ion starvation IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP Neighborhood
BP GO:0010359 regulation of anion channel activity IEP Neighborhood
BP GO:0010396 rhamnogalacturonan II metabolic process IEP Neighborhood
MF GO:0015105 arsenite transmembrane transporter activity IEP Neighborhood
MF GO:0015250 water channel activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015700 arsenite transport IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
BP GO:0016487 farnesol metabolic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
BP GO:0021700 developmental maturation IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
BP GO:0022898 regulation of transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0031667 response to nutrient levels IEP Neighborhood
BP GO:0031668 cellular response to extracellular stimulus IEP Neighborhood
BP GO:0031669 cellular response to nutrient levels IEP Neighborhood
BP GO:0032409 regulation of transporter activity IEP Neighborhood
BP GO:0032412 regulation of ion transmembrane transporter activity IEP Neighborhood
CC GO:0032541 cortical endoplasmic reticulum IEP Neighborhood
BP GO:0032879 regulation of localization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034308 primary alcohol metabolic process IEP Neighborhood
BP GO:0034762 regulation of transmembrane transport IEP Neighborhood
BP GO:0034765 regulation of ion transmembrane transport IEP Neighborhood
MF GO:0035252 UDP-xylosyltransferase activity IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042594 response to starvation IEP Neighborhood
CC GO:0042807 central vacuole IEP Neighborhood
BP GO:0043269 regulation of ion transport IEP Neighborhood
BP GO:0044070 regulation of anion transport IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
MF GO:0046910 pectinesterase inhibitor activity IEP Neighborhood
MF GO:0047886 farnesol dehydrogenase activity IEP Neighborhood
BP GO:0048469 cell maturation IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048764 trichoblast maturation IEP Neighborhood
BP GO:0048765 root hair cell differentiation IEP Neighborhood
BP GO:0048767 root hair elongation IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051049 regulation of transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051592 response to calcium ion IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0052325 cell wall pectin biosynthetic process IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:0071496 cellular response to external stimulus IEP Neighborhood
BP GO:0071695 anatomical structure maturation IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0071782 endoplasmic reticulum tubular network IEP Neighborhood
MF GO:0072509 divalent inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0090627 plant epidermal cell differentiation IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0098827 endoplasmic reticulum subcompartment IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1903959 regulation of anion transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 178 357
No external refs found!