AT3G28140

Description : RNA ligase/cyclic nucleotide phosphodiesterase family protein

Gene families : OG0009082 (Archaeplastida) Phylogenetic Tree(s): OG0009082_tree ,
OG_05_0008881 (LandPlants) Phylogenetic Tree(s): OG_05_0008881_tree ,
OG_06_0008669 (SeedPlants) Phylogenetic Tree(s): OG_06_0008669_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G28140
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zm00001e009760_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005516	calmodulin binding	ISS	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006650	glycerophospholipid metabolic process	None	Extended
BP	GO:0006661	phosphatidylinositol biosynthetic process	RCA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0045017	glycerolipid biosynthetic process	None	Extended
BP	GO:0046474	glycerophospholipid biosynthetic process	None	Extended
BP	GO:0046486	glycerolipid metabolic process	None	Extended
BP	GO:0046488	phosphatidylinositol metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Neighborhood
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0000103	sulfate assimilation	IEP	Neighborhood
BP	GO:0002229	defense response to oomycetes	IEP	Neighborhood
BP	GO:0002239	response to oomycetes	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Neighborhood
MF	GO:0004124	cysteine synthase activity	IEP	Neighborhood
MF	GO:0004582	dolichyl-phosphate beta-D-mannosyltransferase activity	IEP	Neighborhood
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	Neighborhood
MF	GO:0004686	elongation factor-2 kinase activity	IEP	Neighborhood
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0004844	uracil DNA N-glycosylase activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005697	telomerase holoenzyme complex	IEP	Neighborhood
CC	GO:0005834	heterotrimeric G-protein complex	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006261	DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006534	cysteine metabolic process	IEP	Neighborhood
BP	GO:0006568	tryptophan metabolic process	IEP	Neighborhood
BP	GO:0006569	tryptophan catabolic process	IEP	Neighborhood
BP	GO:0006586	indolalkylamine metabolic process	IEP	Neighborhood
BP	GO:0006626	protein targeting to mitochondrion	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006839	mitochondrial transport	IEP	Neighborhood
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Neighborhood
MF	GO:0008106	alcohol dehydrogenase (NADP+) activity	IEP	Neighborhood
MF	GO:0008265	Mo-molybdopterin cofactor sulfurase activity	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Neighborhood
BP	GO:0009086	methionine biosynthetic process	IEP	Neighborhood
BP	GO:0009308	amine metabolic process	IEP	Neighborhood
CC	GO:0009330	DNA topoisomerase complex (ATP-hydrolyzing)	IEP	Neighborhood
BP	GO:0009403	toxin biosynthetic process	IEP	Neighborhood
BP	GO:0009682	induced systemic resistance	IEP	Neighborhood
BP	GO:0009700	indole phytoalexin biosynthetic process	IEP	Neighborhood
MF	GO:0009917	sterol 5-alpha reductase activity	IEP	Neighborhood
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Neighborhood
BP	GO:0010120	camalexin biosynthetic process	IEP	Neighborhood
BP	GO:0010268	brassinosteroid homeostasis	IEP	Neighborhood
MF	GO:0010436	carotenoid dioxygenase activity	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
MF	GO:0016783	sulfurtransferase activity	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0019344	cysteine biosynthetic process	IEP	Neighborhood
CC	GO:0031501	mannosyltransferase complex	IEP	Neighborhood
BP	GO:0032206	positive regulation of telomere maintenance	IEP	Neighborhood
BP	GO:0032210	regulation of telomere maintenance via telomerase	IEP	Neighborhood
BP	GO:0032212	positive regulation of telomere maintenance via telomerase	IEP	Neighborhood
BP	GO:0032392	DNA geometric change	IEP	Neighborhood
BP	GO:0032508	DNA duplex unwinding	IEP	Neighborhood
CC	GO:0033185	dolichol-phosphate-mannose synthase complex	IEP	Neighborhood
BP	GO:0034754	cellular hormone metabolic process	IEP	Neighborhood
MF	GO:0042162	telomeric DNA binding	IEP	Neighborhood
BP	GO:0042436	indole-containing compound catabolic process	IEP	Neighborhood
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Neighborhood
BP	GO:0043687	post-translational protein modification	IEP	Neighborhood
BP	GO:0043966	histone H3 acetylation	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
MF	GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	IEP	Neighborhood
BP	GO:0046217	indole phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0046218	indolalkylamine catabolic process	IEP	Neighborhood
BP	GO:0048232	male gamete generation	IEP	Neighborhood
BP	GO:0048449	floral organ formation	IEP	Neighborhood
MF	GO:0050213	progesterone 5-alpha-reductase activity	IEP	Neighborhood
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0052314	phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0052315	phytoalexin biosynthetic process	IEP	Neighborhood
BP	GO:0052317	camalexin metabolic process	IEP	Neighborhood
BP	GO:0055088	lipid homeostasis	IEP	Neighborhood
BP	GO:0060359	response to ammonium ion	IEP	Neighborhood
MF	GO:0061505	DNA topoisomerase II activity	IEP	Neighborhood
BP	GO:0070585	protein localization to mitochondrion	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Neighborhood
MF	GO:0097506	deaminated base DNA N-glycosylase activity	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood
BP	GO:1904356	regulation of telomere maintenance via telomere lengthening	IEP	Neighborhood
BP	GO:1904358	positive regulation of telomere maintenance via telomere lengthening	IEP	Neighborhood
CC	GO:1905360	GTPase complex	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000278	regulation of DNA biosynthetic process	IEP	Neighborhood
BP	GO:2000573	positive regulation of DNA biosynthetic process	IEP	Neighborhood
BP	GO:2001252	positive regulation of chromosome organization	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G28140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation