AT3G49250 (IDN1, DMS3)


Aliases : IDN1, DMS3

Description : defective in meristem silencing 3


Gene families : OG0001631 (Archaeplastida) Phylogenetic Tree(s): OG0001631_tree ,
OG_05_0001176 (LandPlants) Phylogenetic Tree(s): OG_05_0001176_tree ,
OG_06_0002460 (SeedPlants) Phylogenetic Tree(s): OG_06_0002460_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49250
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cre17.g736750 No alias No description available 0.01 Archaeplastida
MA_10426383g0010 No alias no description available(sp|f4kfs5|gmi1_arath : 233.0) 0.07 Archaeplastida
MA_217357g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp7g15910.1 No alias no description available(sp|f4kfs5|gmi1_arath : 444.0) 0.02 Archaeplastida
Pp3c8_21182V3.1 No alias gamma-irradiation and mitomycin c induced 1 0.04 Archaeplastida
Solyc03g083210.3.1 No alias component DMS3 of DNA methylation accessory complex (DDR) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000724 double-strand break repair via homologous recombination RCA Interproscan
BP GO:0006261 DNA-dependent DNA replication RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation IMP Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006342 chromatin silencing RCA Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0009555 pollen development RCA Interproscan
BP GO:0009616 virus induced gene silencing RCA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0016444 somatic cell DNA recombination RCA Interproscan
BP GO:0016569 covalent chromatin modification RCA Interproscan
BP GO:0031047 gene silencing by RNA IMP Interproscan
BP GO:0031047 gene silencing by RNA RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP Neighborhood
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000228 nuclear chromosome IEP Neighborhood
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0000776 kinetochore IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
CC GO:0000793 condensed chromosome IEP Neighborhood
CC GO:0000794 condensed nuclear chromosome IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004076 biotin synthase activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity IEP Neighborhood
MF GO:0004318 enoyl-[acyl-carrier-protein] reductase (NADH) activity IEP Neighborhood
MF GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity IEP Neighborhood
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
CC GO:0005677 chromatin silencing complex IEP Neighborhood
CC GO:0005719 nuclear euchromatin IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005835 fatty acid synthase complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006084 acetyl-CoA metabolic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006349 regulation of gene expression by genetic imprinting IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006637 acyl-CoA metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006732 coenzyme metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006768 biotin metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007093 mitotic cell cycle checkpoint IEP Neighborhood
BP GO:0007094 mitotic spindle assembly checkpoint IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007140 male meiotic nuclear division IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008710 8-amino-7-oxononanoate synthase activity IEP Neighborhood
BP GO:0009102 biotin biosynthetic process IEP Neighborhood
BP GO:0009108 coenzyme biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
CC GO:0009532 plastid stroma IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
CC GO:0009570 chloroplast stroma IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009816 defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010214 seed coat development IEP Neighborhood
CC GO:0010317 pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex IEP Neighborhood
BP GO:0010495 long-distance posttranscriptional gene silencing IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
BP GO:0010948 negative regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
CC GO:0015030 Cajal body IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
MF GO:0016297 acyl-[acyl-carrier-protein] hydrolase activity IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
CC GO:0016604 nuclear body IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016631 enoyl-[acyl-carrier-protein] reductase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016783 sulfurtransferase activity IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
BP GO:0031577 spindle checkpoint IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033046 negative regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Neighborhood
CC GO:0033597 mitotic checkpoint complex IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
MF GO:0035197 siRNA binding IEP Neighborhood
BP GO:0035383 thioester metabolic process IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045787 positive regulation of cell cycle IEP Neighborhood
BP GO:0045839 negative regulation of mitotic nuclear division IEP Neighborhood
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Neighborhood
BP GO:0045930 negative regulation of mitotic cell cycle IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046519 sphingoid metabolic process IEP Neighborhood
BP GO:0046520 sphingoid biosynthetic process IEP Neighborhood
MF GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
MF GO:0051192 prosthetic group binding IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051784 negative regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
BP GO:0051985 negative regulation of chromosome segregation IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071173 spindle assembly checkpoint IEP Neighborhood
BP GO:0071174 mitotic spindle checkpoint IEP Neighborhood
BP GO:0071514 genetic imprinting IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
CC GO:0090568 nuclear transcriptional repressor complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:0140013 meiotic nuclear division IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901988 negative regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
BP GO:1905819 negative regulation of chromosome separation IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:2001251 negative regulation of chromosome organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!