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  5. Zm00001e038060_P001

Zm00001e038060_P001


Description : Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana (sp|q9sz52|pp344_arath : 1095.0)


Gene families : OG0008852 (Archaeplastida) Phylogenetic Tree(s): OG0008852_tree ,
OG_05_0008546 (LandPlants) Phylogenetic Tree(s): OG_05_0008546_tree ,
OG_06_0005697 (SeedPlants) Phylogenetic Tree(s): OG_06_0005697_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038060_P001
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00039970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g31850,... 0.03 Archaeplastida
AT4G31850 PGR3 proton gradient regulation 3 0.05 Archaeplastida
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Gb_22719 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 Archaeplastida
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 Archaeplastida
Gb_33624 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 Archaeplastida
LOC_Os10g28600.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.06 Archaeplastida
Solyc04g015440.4.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
BP GO:0009435 NAD biosynthetic process IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019674 NAD metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 737 762
IPR002885 Pentatricopeptide_repeat 422 447
IPR033443 PPR_long 189 332
IPR002885 Pentatricopeptide_repeat 345 393
IPR002885 Pentatricopeptide_repeat 449 497
IPR002885 Pentatricopeptide_repeat 1044 1084
IPR002885 Pentatricopeptide_repeat 837 883
IPR002885 Pentatricopeptide_repeat 589 637
IPR002885 Pentatricopeptide_repeat 908 953
IPR002885 Pentatricopeptide_repeat 767 811
IPR002885 Pentatricopeptide_repeat 974 1018
IPR002885 Pentatricopeptide_repeat 519 567
No external refs found!