AT3G54920 (PMR6)

Aliases : PMR6

Description : Pectin lyase-like superfamily protein

Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G54920
Cluster	HCCA: Cluster_245

Target	Alias	Description	ECC score	Gene Family Method
AT1G14420	AT59	Pectate lyase family protein	0.03	Archaeplastida
GSVIVT01016208001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.05	Archaeplastida
LOC_Os04g05050.1	No alias	pectate lyase	0.02	Archaeplastida
MA_203992g0010	No alias	pectate lyase	0.03	Archaeplastida
Pp3c1_33130V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c21_16990V3.1	No alias	Pectate lyase family protein	0.03	Archaeplastida
Solyc03g113150.3.1	No alias	pectate lyase	0.03	Archaeplastida
Zm00001e029999_P001	No alias	pectate lyase	0.03	Archaeplastida
Zm00001e040624_P001	No alias	pectate lyase	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	RCA	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009814	defense response, incompatible interaction	IMP	Interproscan
BP	GO:0009825	multidimensional cell growth	RCA	Interproscan
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009932	cell tip growth	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	ISS	Interproscan
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	ISS	Interproscan
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	TAS	Interproscan
CC	GO:0031226	intrinsic component of plasma membrane	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IMP	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044459	plasma membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
CC	GO:0046658	anchored component of plasma membrane	ISS	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Neighborhood
MF	GO:0000064	L-ornithine transmembrane transporter activity	IEP	Neighborhood
BP	GO:0000165	MAPK cascade	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0003941	L-serine ammonia-lyase activity	IEP	Neighborhood
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Neighborhood
MF	GO:0005199	structural constituent of cell wall	IEP	Neighborhood
MF	GO:0005290	L-histidine transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006516	glycoprotein catabolic process	IEP	Neighborhood
BP	GO:0006563	L-serine metabolic process	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
MF	GO:0008721	D-serine ammonia-lyase activity	IEP	Neighborhood
BP	GO:0009100	glycoprotein metabolic process	IEP	Neighborhood
BP	GO:0009566	fertilization	IEP	Neighborhood
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Neighborhood
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0010103	stomatal complex morphogenesis	IEP	Neighborhood
BP	GO:0010229	inflorescence development	IEP	Neighborhood
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	Neighborhood
BP	GO:0010639	negative regulation of organelle organization	IEP	Neighborhood
BP	GO:0010941	regulation of cell death	IEP	Neighborhood
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015173	aromatic amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015181	arginine transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015189	L-lysine transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015928	fucosidase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016841	ammonia-lyase activity	IEP	Neighborhood
MF	GO:0016854	racemase and epimerase activity	IEP	Neighborhood
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Neighborhood
MF	GO:0019187	beta-1,4-mannosyltransferase activity	IEP	Neighborhood
BP	GO:0023014	signal transduction by protein phosphorylation	IEP	Neighborhood
BP	GO:0030036	actin cytoskeleton organization	IEP	Neighborhood
MF	GO:0030378	serine racemase activity	IEP	Neighborhood
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0031333	negative regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0031348	negative regulation of defense response	IEP	Neighborhood
BP	GO:0032272	negative regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032880	regulation of protein localization	IEP	Neighborhood
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Neighborhood
BP	GO:0043067	regulation of programmed cell death	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043242	negative regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0046416	D-amino acid metabolic process	IEP	Neighborhood
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Neighborhood
MF	GO:0047661	amino-acid racemase activity	IEP	Neighborhood
BP	GO:0048585	negative regulation of response to stimulus	IEP	Neighborhood
MF	GO:0051015	actin filament binding	IEP	Neighborhood
BP	GO:0051016	barbed-end actin filament capping	IEP	Neighborhood
BP	GO:0051129	negative regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051193	regulation of cofactor metabolic process	IEP	Neighborhood
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051693	actin filament capping	IEP	Neighborhood
MF	GO:0051753	mannan synthase activity	IEP	Neighborhood
BP	GO:0070178	D-serine metabolic process	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0080135	regulation of cellular response to stress	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
BP	GO:0090626	plant epidermis morphogenesis	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood
MF	GO:1901474	azole transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901879	regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	161	334

External Links

No external refs found!

AT3G54920 (PMR6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation