Zm00001e040854_P001

Description : U-box domain-containing protein 29 OS=Arabidopsis thaliana (sp|q9lsa6|pub29_arath : 117.0)

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0004101 (SeedPlants) Phylogenetic Tree(s): OG_06_0004101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e040854_P001
Cluster	HCCA: Cluster_230

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00130440	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AMTR_s00030p00159240	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00043p00215340	evm_27.TU.AmTr_v1...	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00069p00038840	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00138p00053700	evm_27.TU.AmTr_v1...	U-box domain-containing protein 21 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT3G52450	PUB22	plant U-box 22	0.03	Archaeplastida
GSVIVT01011139001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01011140001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01011616001	No alias	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01026542001	No alias	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_02628	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_02629	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Gb_11650	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.02	Archaeplastida
Gb_16228	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
Gb_19502	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_29851	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
Gb_29938	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os01g64570.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g34410.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g50460.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os03g13740.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os04g34140.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
LOC_Os04g49970.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os04g58920.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os06g13870.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os08g04470.1	No alias	U-box domain-containing protein 8 OS=Arabidopsis...	0.08	Archaeplastida
LOC_Os10g03440.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
MA_126399g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
MA_1663g0020	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
MA_17715g0010	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	Archaeplastida
MA_33190g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_415344g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
MA_6335g0010	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
MA_84154g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Mp2g06090.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Mp3g01700.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Mp3g22740.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Mp3g22750.1	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.02	Archaeplastida
Pp3c10_20630V3.1	No alias	plant U-box 22	0.02	Archaeplastida
Pp3c19_3920V3.1	No alias	plant U-box 23	0.02	Archaeplastida
Smo104879	No alias	U-box domain-containing protein 25 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc01g007050.3.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g009320.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g080920.3.1	No alias	No annotation	0.03	Archaeplastida
Solyc04g008100.3.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
Solyc04g071030.1.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Solyc06g074140.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	Archaeplastida
Solyc11g005700.1.1	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
Solyc11g068940.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e000999_P001	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e015763_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e036030_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e039417_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000813	ESCRT I complex	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0007186	G-protein coupled receptor signaling pathway	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0071985	multivesicular body sorting pathway	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	21	90

External Links

No external refs found!

Zm00001e040854_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation