Mp1g19410.1

Description : SSU processome assembly factor (SWA3)

Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree ,
OG_05_0001508 (LandPlants) Phylogenetic Tree(s): OG_05_0001508_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g19410.1
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00091760	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	Archaeplastida
AMTR_s00121p00103870	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G16280	AtRH36, SWA3, RH36	RNA helicase 36	0.09	Archaeplastida
AT4G16630	No alias	DEA(D/H)-box RNA helicase family protein	0.03	Archaeplastida
Cpa\|evm.model.tig00000792.35	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.14	Archaeplastida
Cpa\|evm.model.tig00020848.20	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00021122.18	No alias	DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cre10.g420900	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.17	Archaeplastida
Cre12.g505200	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.03	Archaeplastida
GSVIVT01002619001	No alias	DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01009935001	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.14	Archaeplastida
GSVIVT01036761001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Gb_16576	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.05	Archaeplastida
Gb_23737	No alias	SSU processome assembly factor (SWA3)	0.02	Archaeplastida
Gb_36370	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os03g46610.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.03	Archaeplastida
LOC_Os07g43980.1	No alias	SSU processome assembly factor (SWA3)	0.03	Archaeplastida
LOC_Os12g29660.1	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.06	Archaeplastida
MA_57429g0010	No alias	DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis...	0.02	Archaeplastida
MA_8567568g0010	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.04	Archaeplastida
Pp3c16_16520V3.1	No alias	RNA helicase 36	0.06	Archaeplastida
Pp3c1_37280V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.07	Archaeplastida
Pp3c9_14310V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.1	Archaeplastida
Smo107914	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.02	Archaeplastida
Solyc04g081580.4.1	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis...	0.13	Archaeplastida
Solyc10g005520.3.1	No alias	SSU processome assembly factor (SWA3)	0.04	Archaeplastida
Solyc10g007550.3.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.07	Archaeplastida
Zm00001e010143_P002	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.09	Archaeplastida
Zm00001e013281_P004	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.11	Archaeplastida
Zm00001e034676_P001	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.02	Archaeplastida
Zm00001e035639_P002	No alias	SSU processome assembly factor (SWA3)	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Neighborhood
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0003909	DNA ligase activity	IEP	Neighborhood
MF	GO:0003911	DNA ligase (NAD+) activity	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Neighborhood
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008175	tRNA methyltransferase activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
BP	GO:0030490	maturation of SSU-rRNA	IEP	Neighborhood
MF	GO:0030515	snoRNA binding	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
CC	GO:0034457	Mpp10 complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
CC	GO:0043190	ATP-binding cassette (ABC) transporter complex	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044452	nucleolar part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0060590	ATPase regulator activity	IEP	Neighborhood
MF	GO:0061505	DNA topoisomerase II activity	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
CC	GO:0098533	ATPase dependent transmembrane transport complex	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1902495	transmembrane transporter complex	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood
CC	GO:1990351	transporter complex	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	299	404
IPR011545	DEAD/DEAH_box_helicase_dom	89	257

External Links

No external refs found!

Mp1g19410.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation