Coexpression cluster: Cluster_16 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 10.09% (22/218) 2.84 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 15.14% (33/218) 2.09 0.0 0.0
GO:0090304 nucleic acid metabolic process 11.01% (24/218) 2.48 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 12.84% (28/218) 2.21 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 12.39% (27/218) 2.19 0.0 0.0
GO:0046483 heterocycle metabolic process 12.39% (27/218) 2.2 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 11.47% (25/218) 2.24 0.0 0.0
GO:0006396 RNA processing 5.96% (13/218) 3.22 0.0 0.0
GO:0003676 nucleic acid binding 13.3% (29/218) 1.82 0.0 0.0
GO:0034470 ncRNA processing 4.13% (9/218) 3.84 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 5.05% (11/218) 2.97 0.0 5e-06
GO:0044237 cellular metabolic process 18.81% (41/218) 1.2 0.0 1e-05
GO:0006807 nitrogen compound metabolic process 17.43% (38/218) 1.21 1e-06 2.3e-05
GO:0034660 ncRNA metabolic process 4.13% (9/218) 3.11 1e-06 2.4e-05
GO:0034645 cellular macromolecule biosynthetic process 6.42% (14/218) 2.29 1e-06 2.6e-05
GO:0043170 macromolecule metabolic process 16.06% (35/218) 1.26 1e-06 2.7e-05
GO:0009058 biosynthetic process 9.63% (21/218) 1.73 2e-06 3.2e-05
GO:0003723 RNA binding 5.5% (12/218) 2.48 2e-06 3.2e-05
GO:0044249 cellular biosynthetic process 8.72% (19/218) 1.81 2e-06 4.1e-05
GO:0009059 macromolecule biosynthetic process 6.42% (14/218) 2.15 4e-06 6.1e-05
GO:1901576 organic substance biosynthetic process 8.72% (19/218) 1.73 5e-06 8.1e-05
GO:0006364 rRNA processing 2.29% (5/218) 4.21 6e-06 8.6e-05
GO:0016072 rRNA metabolic process 2.29% (5/218) 4.21 6e-06 8.6e-05
GO:0042254 ribosome biogenesis 1.83% (4/218) 4.89 7e-06 9.7e-05
GO:0022613 ribonucleoprotein complex biogenesis 1.83% (4/218) 4.78 1e-05 0.000133
GO:0005634 nucleus 3.67% (8/218) 2.92 1.1e-05 0.000135
GO:0071704 organic substance metabolic process 19.27% (42/218) 0.98 1.3e-05 0.00016
GO:0044238 primary metabolic process 18.35% (40/218) 0.98 2.1e-05 0.000249
GO:0009987 cellular process 18.81% (41/218) 0.96 2.3e-05 0.000258
GO:0044271 cellular nitrogen compound biosynthetic process 6.42% (14/218) 1.87 3.3e-05 0.00036
GO:0006351 transcription, DNA-templated 2.75% (6/218) 3.2 4.6e-05 0.000421
GO:0097659 nucleic acid-templated transcription 2.75% (6/218) 3.2 4.6e-05 0.000421
GO:0043229 intracellular organelle 5.96% (13/218) 1.93 4e-05 0.000426
GO:0043226 organelle 5.96% (13/218) 1.93 4.2e-05 0.000427
GO:1901363 heterocyclic compound binding 19.27% (42/218) 0.91 4.5e-05 0.000434
GO:0097159 organic cyclic compound binding 19.27% (42/218) 0.91 4.5e-05 0.000434
GO:0043231 intracellular membrane-bounded organelle 3.67% (8/218) 2.56 6.7e-05 0.000577
GO:0043227 membrane-bounded organelle 3.67% (8/218) 2.56 6.7e-05 0.000577
GO:1901362 organic cyclic compound biosynthetic process 4.59% (10/218) 2.16 9.1e-05 0.00076
GO:0005488 binding 28.9% (63/218) 0.65 0.000103 0.000838
GO:0019438 aromatic compound biosynthetic process 4.13% (9/218) 2.15 0.000213 0.001692
GO:0018130 heterocycle biosynthetic process 4.13% (9/218) 2.11 0.000261 0.002023
GO:0008033 tRNA processing 1.83% (4/218) 3.57 0.000337 0.002552
GO:0032774 RNA biosynthetic process 2.75% (6/218) 2.67 0.000366 0.002714
GO:0044085 cellular component biogenesis 1.83% (4/218) 3.48 0.000434 0.003144
GO:0008173 RNA methyltransferase activity 1.38% (3/218) 4.16 0.000575 0.004072
GO:0097747 RNA polymerase activity 1.83% (4/218) 3.35 0.000615 0.00418
GO:0034062 5'-3' RNA polymerase activity 1.83% (4/218) 3.35 0.000615 0.00418
GO:0003674 molecular_function 42.66% (93/218) 0.41 0.000691 0.004594
GO:1990904 ribonucleoprotein complex 3.67% (8/218) 1.98 0.00103 0.006719
GO:0034654 nucleobase-containing compound biosynthetic process 3.21% (7/218) 2.12 0.001175 0.007508
GO:0017150 tRNA dihydrouridine synthase activity 0.92% (2/218) 5.16 0.001227 0.007545
GO:0016779 nucleotidyltransferase activity 2.29% (5/218) 2.65 0.001215 0.007615
GO:0001522 pseudouridine synthesis 1.38% (3/218) 3.74 0.001381 0.008338
GO:0008152 metabolic process 22.02% (48/218) 0.61 0.00166 0.009838
GO:1901566 organonitrogen compound biosynthetic process 4.59% (10/218) 1.61 0.001768 0.010295
GO:0008168 methyltransferase activity 3.21% (7/218) 1.91 0.002746 0.015707
GO:0030684 preribosome 0.92% (2/218) 4.48 0.003359 0.01888
GO:0016741 transferase activity, transferring one-carbon groups 3.21% (7/218) 1.84 0.003564 0.019693
GO:0140101 catalytic activity, acting on a tRNA 1.83% (4/218) 2.62 0.00408 0.02217
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.38% (3/218) 3.11 0.004974 0.02658
GO:0006399 tRNA metabolic process 1.83% (4/218) 2.41 0.006818 0.035848
GO:0009451 RNA modification 1.38% (3/218) 2.85 0.008185 0.042352
GO:0006412 translation 2.75% (6/218) 1.78 0.008429 0.042935
GO:0043604 amide biosynthetic process 2.75% (6/218) 1.69 0.011235 0.045219
GO:0032549 ribonucleoside binding 2.29% (5/218) 1.87 0.012234 0.045321
GO:0032561 guanyl ribonucleotide binding 2.29% (5/218) 1.87 0.012234 0.045321
GO:0032550 purine ribonucleoside binding 2.29% (5/218) 1.87 0.012234 0.045321
GO:0001883 purine nucleoside binding 2.29% (5/218) 1.87 0.012234 0.045321
GO:0005525 GTP binding 2.29% (5/218) 1.87 0.012234 0.045321
GO:0001882 nucleoside binding 2.29% (5/218) 1.87 0.012234 0.045321
GO:0004526 ribonuclease P activity 0.46% (1/218) 6.48 0.011225 0.045742
GO:0006282 regulation of DNA repair 0.46% (1/218) 6.48 0.011225 0.045742
GO:0044452 nucleolar part 0.46% (1/218) 6.48 0.011225 0.045742
GO:0003919 FMN adenylyltransferase activity 0.46% (1/218) 6.48 0.011225 0.045742
GO:0003724 RNA helicase activity 0.46% (1/218) 6.48 0.011225 0.045742
GO:0003911 DNA ligase (NAD+) activity 0.46% (1/218) 6.48 0.011225 0.045742
GO:0034457 Mpp10 complex 0.46% (1/218) 6.48 0.011225 0.045742
GO:0005732 small nucleolar ribonucleoprotein complex 0.46% (1/218) 6.48 0.011225 0.045742
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 0.46% (1/218) 6.48 0.011225 0.045742
GO:0003856 3-dehydroquinate synthase activity 0.46% (1/218) 6.48 0.011225 0.045742
GO:0080134 regulation of response to stress 0.46% (1/218) 6.48 0.011225 0.045742
GO:0080135 regulation of cellular response to stress 0.46% (1/218) 6.48 0.011225 0.045742
GO:0004019 adenylosuccinate synthase activity 0.46% (1/218) 6.48 0.011225 0.045742
GO:2001020 regulation of response to DNA damage stimulus 0.46% (1/218) 6.48 0.011225 0.045742
GO:0009073 aromatic amino acid family biosynthetic process 0.92% (2/218) 3.57 0.011962 0.047555
GO:0043043 peptide biosynthetic process 2.75% (6/218) 1.74 0.009483 0.04756
GO:0019001 guanyl nucleotide binding 2.29% (5/218) 1.84 0.013053 0.047814
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.049 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_139 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.07 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_233 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_67 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_213 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_246 0.041 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_257 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_259 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.034 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_55 0.034 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.045 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.039 Archaeplastida Compare
Gingko biloba HCCA Cluster_289 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_324 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.035 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_86 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.037 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.086 Archaeplastida Compare
Zea mays HCCA Cluster_276 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_350 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_363 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.043 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.034 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.079 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_176 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.037 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_290 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.064 Archaeplastida Compare
Picea abies HCCA Cluster_238 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_256 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.035 Archaeplastida Compare
Picea abies HCCA Cluster_393 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_427 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_495 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_536 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.096 Archaeplastida Compare
Oryza sativa HCCA Cluster_141 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_200 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.047 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_82 0.029 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_164 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.086 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_127 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_131 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.052 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_229 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.039 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_84 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_92 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.047 Archaeplastida Compare
Vitis vinifera HCCA Cluster_164 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.046 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.033 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.042 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.05 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.078 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_118 0.019 Archaeplastida Compare
Sequences (218) (download table)

InterPro Domains

GO Terms

Family Terms