AT4G00180 (YAB3)

Aliases : YAB3

Description : Plant-specific transcription factor YABBY family protein

Gene families : OG0000890 (Archaeplastida) Phylogenetic Tree(s): OG0000890_tree ,
OG_05_0006725 (LandPlants) Phylogenetic Tree(s): OG_05_0006725_tree ,
OG_06_0004255 (SeedPlants) Phylogenetic Tree(s): OG_06_0004255_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00180
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00032940	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT1G23420	INO	Plant-specific transcription factor YABBY family protein	0.03	Archaeplastida
GSVIVT01015567001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.08	Archaeplastida
GSVIVT01037533001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
LOC_Os03g11600.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
LOC_Os10g36420.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Zm00001e007412_P003	No alias	transcription factor (YABBY)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010154	fruit development	IMP	Interproscan
BP	GO:0010158	abaxial cell fate specification	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
CC	GO:0000793	condensed chromosome	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006546	glycine catabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0008285	negative regulation of cell proliferation	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
BP	GO:0009071	serine family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009106	lipoate metabolic process	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
BP	GO:0009615	response to virus	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009686	gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009798	axis specification	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009838	abscission	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0009934	regulation of meristem structural organization	IEP	Neighborhood
BP	GO:0009946	proximal/distal axis specification	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010103	stomatal complex morphogenesis	IEP	Neighborhood
BP	GO:0010162	seed dormancy process	IEP	Neighborhood
BP	GO:0010227	floral organ abscission	IEP	Neighborhood
BP	GO:0010338	leaf formation	IEP	Neighborhood
BP	GO:0010371	regulation of gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Neighborhood
BP	GO:0010480	microsporocyte differentiation	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0019216	regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0022611	dormancy process	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
BP	GO:0031407	oxylipin metabolic process	IEP	Neighborhood
BP	GO:0031408	oxylipin biosynthetic process	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0042135	neurotransmitter catabolic process	IEP	Neighborhood
BP	GO:0043455	regulation of secondary metabolic process	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048513	animal organ development	IEP	Neighborhood
BP	GO:0048533	sporocyte differentiation	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048653	anther development	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048768	root hair cell tip growth	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0051301	cell division	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Neighborhood
BP	GO:0090470	shoot organ boundary specification	IEP	Neighborhood
BP	GO:0090626	plant epidermis morphogenesis	IEP	Neighborhood
BP	GO:0090691	formation of plant organ boundary	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006780	YABBY	21	201

External Links

No external refs found!

AT4G00180 (YAB3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation