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  5. Pp3c12_4000V3.1

Pp3c12_4000V3.1


Description : TUDOR-SN protein 1


Gene families : OG0003332 (Archaeplastida) Phylogenetic Tree(s): OG0003332_tree ,
OG_05_0004369 (LandPlants) Phylogenetic Tree(s): OG_05_0004369_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_4000V3.1
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00246090 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.05 Archaeplastida
AT5G07350 Tudor1, AtTudor1, TSN1 TUDOR-SN protein 1 0.09 Archaeplastida
AT5G61780 TSN2, Tudor2, AtTudor2 TUDOR-SN protein 2 0.05 Archaeplastida
Cre11.g477850 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
GSVIVT01005677001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
LOC_Os02g32350.1 No alias ribonuclease (TSN) 0.04 Archaeplastida
Mp2g04260.1 No alias ribonuclease (TSN) 0.04 Archaeplastida
Smo165776 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 Archaeplastida
Solyc03g118010.4.1 No alias ribonuclease (TSN) 0.02 Archaeplastida
Solyc03g118020.3.1 No alias ribonuclease (TSN) 0.03 Archaeplastida
Zm00001e022564_P001 No alias ribonuclease (TSN) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!