AT4G17140

Description : pleckstrin homology (PH) domain-containing protein

Gene families : OG0000529 (Archaeplastida) Phylogenetic Tree(s): OG0000529_tree ,
OG_05_0000912 (LandPlants) Phylogenetic Tree(s): OG_05_0000912_tree ,
OG_06_0007834 (SeedPlants) Phylogenetic Tree(s): OG_06_0007834_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G17140
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000042.91	No alias	No description available	0.02	Archaeplastida
Cpa\|evm.model.tig00000615.84	No alias	No description available	0.01	Archaeplastida
Cpa\|evm.model.tig00020710.86	No alias	No description available	0.01	Archaeplastida
Cpa\|evm.model.tig00021428.20	No alias	No description available	0.01	Archaeplastida
GSVIVT01013270001	No alias	No description available	0.03	Archaeplastida
GSVIVT01017643001	No alias	No description available	0.03	Archaeplastida
MA_119498g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_74056g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc08g077500.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007155	cell adhesion	RCA	Interproscan
BP	GO:0008064	regulation of actin polymerization or depolymerization	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010638	positive regulation of organelle organization	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022610	biological adhesion	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030832	regulation of actin filament length	None	Extended
BP	GO:0030833	regulation of actin filament polymerization	None	Extended
BP	GO:0030838	positive regulation of actin filament polymerization	None	Extended
BP	GO:0031334	positive regulation of protein complex assembly	None	Extended
BP	GO:0032271	regulation of protein polymerization	None	Extended
BP	GO:0032273	positive regulation of protein polymerization	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
BP	GO:0032956	regulation of actin cytoskeleton organization	None	Extended
BP	GO:0032970	regulation of actin filament-based process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043254	regulation of protein complex assembly	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044089	positive regulation of cellular component biogenesis	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051493	regulation of cytoskeleton organization	None	Extended
BP	GO:0051495	positive regulation of cytoskeleton organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090066	regulation of anatomical structure size	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
BP	GO:0110053	regulation of actin filament organization	None	Extended
BP	GO:1902903	regulation of supramolecular fiber organization	None	Extended
BP	GO:1902905	positive regulation of supramolecular fiber organization	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Neighborhood
CC	GO:0000815	ESCRT III complex	IEP	Neighborhood
MF	GO:0001716	L-amino-acid oxidase activity	IEP	Neighborhood
BP	GO:0002376	immune system process	IEP	Neighborhood
BP	GO:0002682	regulation of immune system process	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004040	amidase activity	IEP	Neighborhood
MF	GO:0004630	phospholipase D activity	IEP	Neighborhood
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Neighborhood
MF	GO:0004829	threonine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005388	calcium-transporting ATPase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005665	RNA polymerase II, core complex	IEP	Neighborhood
CC	GO:0005677	chromatin silencing complex	IEP	Neighborhood
CC	GO:0005798	Golgi-associated vesicle	IEP	Neighborhood
CC	GO:0005829	cytosol	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006435	threonyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006465	signal peptide processing	IEP	Neighborhood
BP	GO:0006482	protein demethylation	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006596	polyamine biosynthetic process	IEP	Neighborhood
BP	GO:0006623	protein targeting to vacuole	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006664	glycolipid metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0006955	immune response	IEP	Neighborhood
BP	GO:0006986	response to unfolded protein	IEP	Neighborhood
BP	GO:0006990	positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	IEP	Neighborhood
BP	GO:0007009	plasma membrane organization	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
MF	GO:0008026	ATP-dependent helicase activity	IEP	Neighborhood
BP	GO:0008214	protein dealkylation	IEP	Neighborhood
MF	GO:0008734	L-aspartate oxidase activity	IEP	Neighborhood
MF	GO:0008792	arginine decarboxylase activity	IEP	Neighborhood
BP	GO:0009247	glycolipid biosynthetic process	IEP	Neighborhood
MF	GO:0009378	four-way junction helicase activity	IEP	Neighborhood
BP	GO:0009395	phospholipid catabolic process	IEP	Neighborhood
BP	GO:0009435	NAD biosynthetic process	IEP	Neighborhood
BP	GO:0009445	putrescine metabolic process	IEP	Neighborhood
BP	GO:0009446	putrescine biosynthetic process	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009607	response to biotic stimulus	IEP	Neighborhood
BP	GO:0009608	response to symbiont	IEP	Neighborhood
BP	GO:0009610	response to symbiotic fungus	IEP	Neighborhood
BP	GO:0009620	response to fungus	IEP	Neighborhood
BP	GO:0009720	detection of hormone stimulus	IEP	Neighborhood
BP	GO:0009726	detection of endogenous stimulus	IEP	Neighborhood
BP	GO:0009729	detection of brassinosteroid stimulus	IEP	Neighborhood
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009901	anther dehiscence	IEP	Neighborhood
BP	GO:0010091	trichome branching	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010398	xylogalacturonan metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
MF	GO:0015922	aspartate oxidase activity	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
CC	GO:0016514	SWI/SNF complex	IEP	Neighborhood
BP	GO:0016577	histone demethylation	IEP	Neighborhood
CC	GO:0016591	RNA polymerase II, holoenzyme	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
BP	GO:0016926	protein desumoylation	IEP	Neighborhood
BP	GO:0016999	antibiotic metabolic process	IEP	Neighborhood
BP	GO:0017000	antibiotic biosynthetic process	IEP	Neighborhood
CC	GO:0017053	transcriptional repressor complex	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0019374	galactolipid metabolic process	IEP	Neighborhood
BP	GO:0019375	galactolipid biosynthetic process	IEP	Neighborhood
BP	GO:0019674	NAD metabolic process	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
CC	GO:0030135	coated vesicle	IEP	Neighborhood
CC	GO:0030136	clathrin-coated vesicle	IEP	Neighborhood
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Neighborhood
MF	GO:0030276	clathrin binding	IEP	Neighborhood
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Neighborhood
BP	GO:0031056	regulation of histone modification	IEP	Neighborhood
BP	GO:0031058	positive regulation of histone modification	IEP	Neighborhood
BP	GO:0031060	regulation of histone methylation	IEP	Neighborhood
BP	GO:0031062	positive regulation of histone methylation	IEP	Neighborhood
CC	GO:0031209	SCAR complex	IEP	Neighborhood
BP	GO:0031347	regulation of defense response	IEP	Neighborhood
BP	GO:0031348	negative regulation of defense response	IEP	Neighborhood
BP	GO:0031401	positive regulation of protein modification process	IEP	Neighborhood
BP	GO:0031425	chloroplast RNA processing	IEP	Neighborhood
MF	GO:0031490	chromatin DNA binding	IEP	Neighborhood
BP	GO:0031497	chromatin assembly	IEP	Neighborhood
BP	GO:0031507	heterochromatin assembly	IEP	Neighborhood
CC	GO:0031519	PcG protein complex	IEP	Neighborhood
BP	GO:0032386	regulation of intracellular transport	IEP	Neighborhood
BP	GO:0032388	positive regulation of intracellular transport	IEP	Neighborhood
MF	GO:0032451	demethylase activity	IEP	Neighborhood
MF	GO:0032452	histone demethylase activity	IEP	Neighborhood
MF	GO:0032454	histone demethylase activity (H3-K9 specific)	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032776	DNA methylation on cytosine	IEP	Neighborhood
BP	GO:0032922	circadian regulation of gene expression	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033157	regulation of intracellular protein transport	IEP	Neighborhood
BP	GO:0033169	histone H3-K9 demethylation	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034308	primary alcohol metabolic process	IEP	Neighborhood
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Neighborhood
MF	GO:0035064	methylated histone binding	IEP	Neighborhood
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0042285	xylosyltransferase activity	IEP	Neighborhood
BP	GO:0042439	ethanolamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042631	cellular response to water deprivation	IEP	Neighborhood
MF	GO:0042800	histone methyltransferase activity (H3-K4 specific)	IEP	Neighborhood
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043207	response to external biotic stimulus	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
BP	GO:0045087	innate immune response	IEP	Neighborhood
BP	GO:0045088	regulation of innate immune response	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
BP	GO:0045595	regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045596	negative regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0046825	regulation of protein export from nucleus	IEP	Neighborhood
BP	GO:0046827	positive regulation of protein export from nucleus	IEP	Neighborhood
MF	GO:0047412	N-(long-chain-acyl)ethanolamine deacylase activity	IEP	Neighborhood
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Neighborhood
BP	GO:0048497	maintenance of floral organ identity	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	Neighborhood
BP	GO:0050776	regulation of immune response	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051050	positive regulation of transport	IEP	Neighborhood
BP	GO:0051125	regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051127	positive regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051222	positive regulation of protein transport	IEP	Neighborhood
BP	GO:0051223	regulation of protein transport	IEP	Neighborhood
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0051704	multi-organism process	IEP	Neighborhood
BP	GO:0051707	response to other organism	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060341	regulation of cellular localization	IEP	Neighborhood
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Neighborhood
BP	GO:0070076	histone lysine demethylation	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0070201	regulation of establishment of protein localization	IEP	Neighborhood
BP	GO:0070291	N-acylethanolamine metabolic process	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Neighborhood
BP	GO:0070828	heterochromatin organization	IEP	Neighborhood
BP	GO:0070887	cellular response to chemical stimulus	IEP	Neighborhood
BP	GO:0070919	production of siRNA involved in chromatin silencing by small RNA	IEP	Neighborhood
BP	GO:0070988	demethylation	IEP	Neighborhood
BP	GO:0071229	cellular response to acid chemical	IEP	Neighborhood
BP	GO:0071365	cellular response to auxin stimulus	IEP	Neighborhood
BP	GO:0071462	cellular response to water stimulus	IEP	Neighborhood
BP	GO:0072665	protein localization to vacuole	IEP	Neighborhood
BP	GO:0072666	establishment of protein localization to vacuole	IEP	Neighborhood
BP	GO:0080134	regulation of response to stress	IEP	Neighborhood
BP	GO:0080188	RNA-directed DNA methylation	IEP	Neighborhood
BP	GO:0090087	regulation of peptide transport	IEP	Neighborhood
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	Neighborhood
BP	GO:0090351	seedling development	IEP	Neighborhood
CC	GO:0090568	nuclear transcriptional repressor complex	IEP	Neighborhood
BP	GO:0090700	maintenance of plant organ identity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140030	modification-dependent protein binding	IEP	Neighborhood
MF	GO:0140034	methylation-dependent protein binding	IEP	Neighborhood
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1900150	regulation of defense response to fungus	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901522	positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1902347	response to strigolactone	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	Neighborhood
BP	GO:1903509	liposaccharide metabolic process	IEP	Neighborhood
BP	GO:1903827	regulation of cellular protein localization	IEP	Neighborhood
BP	GO:1903829	positive regulation of cellular protein localization	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	Neighborhood
BP	GO:1905269	positive regulation of chromatin organization	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Neighborhood
BP	GO:2000072	regulation of defense response to fungus, incompatible interaction	IEP	Neighborhood
BP	GO:2001252	positive regulation of chromosome organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR031642	VPS13_mid_rpt	561	782
IPR026854	VPS13_N	2	107
IPR031646	VPS13_N2	133	374
IPR009291	Vps62	1968	2121
IPR009291	Vps62	2192	2339

External Links

No external refs found!

AT4G17140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation