AT4G20050 (QRT3)

Aliases : QRT3

Description : Pectin lyase-like superfamily protein

Gene families : OG0003590 (Archaeplastida) Phylogenetic Tree(s): OG0003590_tree ,
OG_05_0002501 (LandPlants) Phylogenetic Tree(s): OG_05_0002501_tree ,
OG_06_0001950 (SeedPlants) Phylogenetic Tree(s): OG_06_0001950_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G20050
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00255270	evm_27.TU.AmTr_v1...	No description available	0.04	Archaeplastida
AMTR_s00102p00131940	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and...	0.04	Archaeplastida
AMTR_s00319p00013650	evm_27.TU.AmTr_v1...	Polygalacturonase QRT3 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s03255p00000400	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and...	0.03	Archaeplastida
GSVIVT01012139001	No alias	Cell wall.pectin.modification and...	0.11	Archaeplastida
LOC_Os04g52320.1	No alias	polygalacturonase (QRT3)	0.05	Archaeplastida
MA_10425986g0010	No alias	polygalacturonase (QRT3)	0.03	Archaeplastida
MA_10425986g0020	No alias	polygalacturonase (QRT3)	0.03	Archaeplastida
MA_8818361g0010	No alias	polygalacturonase (QRT3)	0.04	Archaeplastida
MA_917578g0010	No alias	polygalacturonase (QRT3)	0.04	Archaeplastida
Solyc02g068400.3.1	No alias	polygalacturonase (QRT3)	0.16	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009556	microsporogenesis	IMP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010208	pollen wall assembly	None	Extended
BP	GO:0010584	pollen exine formation	IMP	Interproscan
BP	GO:0010584	pollen exine formation	RCA	Interproscan
BP	GO:0010927	cellular component assembly involved in morphogenesis	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0034293	sexual sporulation	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048236	plant-type sporogenesis	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0051321	meiotic cell cycle	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0008216	spermidine metabolic process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0009554	megasporogenesis	IEP	Neighborhood
BP	GO:0009555	pollen development	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009820	alkaloid metabolic process	IEP	Neighborhood
BP	GO:0009821	alkaloid biosynthetic process	IEP	Neighborhood
BP	GO:0009943	adaxial/abaxial axis specification	IEP	Neighborhood
BP	GO:0010152	pollen maturation	IEP	Neighborhood
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	Neighborhood
MF	GO:0015271	outward rectifier potassium channel activity	IEP	Neighborhood
MF	GO:0015645	fatty acid ligase activity	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0030638	polyketide metabolic process	IEP	Neighborhood
BP	GO:0030639	polyketide biosynthetic process	IEP	Neighborhood
MF	GO:0031956	medium-chain fatty acid-CoA ligase activity	IEP	Neighborhood
BP	GO:0035337	fatty-acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0035384	thioester biosynthetic process	IEP	Neighborhood
BP	GO:0035445	borate transmembrane transport	IEP	Neighborhood
BP	GO:0042335	cuticle development	IEP	Neighborhood
MF	GO:0042409	caffeoyl-CoA O-methyltransferase activity	IEP	Neighborhood
BP	GO:0046713	borate transport	IEP	Neighborhood
MF	GO:0046715	active borate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0046949	fatty-acyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048316	seed development	IEP	Neighborhood
BP	GO:0048533	sporocyte differentiation	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048658	anther wall tapetum development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	Neighborhood
BP	GO:0051791	medium-chain fatty acid metabolic process	IEP	Neighborhood
BP	GO:0051792	medium-chain fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	Neighborhood
MF	GO:0072532	tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072533	tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072547	tricoumaroylspermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072548	dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072549	monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072550	triferuloylspermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072551	diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072552	monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0080012	trihydroxyferuloyl spermidine O-methyltransferase activity	IEP	Neighborhood
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	Neighborhood
MF	GO:0080072	spermidine:sinapoyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080073	spermidine:coumaroyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080074	spermidine:caffeoyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080075	spermidine:feruloyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080076	caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity	IEP	Neighborhood
MF	GO:0080077	trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity	IEP	Neighborhood
MF	GO:0080078	tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity	IEP	Neighborhood
BP	GO:0080088	spermidine hydroxycinnamate conjugate biosynthetic process	IEP	Neighborhood
BP	GO:0080110	sporopollenin biosynthetic process	IEP	Neighborhood
MF	GO:0090439	tetraketide alpha-pyrone synthase activity	IEP	Neighborhood
BP	GO:0090691	formation of plant organ boundary	IEP	Neighborhood
BP	GO:0098661	inorganic anion transmembrane transport	IEP	Neighborhood
BP	GO:1900150	regulation of defense response to fungus	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR024535	Pectate_lyase_SF_prot	78	298

External Links

No external refs found!

AT4G20050 (QRT3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation