AT4G24550

Description : Clathrin adaptor complexes medium subunit family protein

Gene families : OG0007436 (Archaeplastida) Phylogenetic Tree(s): OG0007436_tree ,
OG_05_0008432 (LandPlants) Phylogenetic Tree(s): OG_05_0008432_tree ,
OG_06_0010074 (SeedPlants) Phylogenetic Tree(s): OG_06_0010074_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G24550
Cluster	HCCA: Cluster_158

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g146600	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.03	Archaeplastida
LOC_Os07g42810.2	No alias	medium subunit mu of AP-4 vacuole cargo adaptor complex	0.05	Archaeplastida
Solyc04g076230.3.1	No alias	medium subunit mu of AP-4 vacuole cargo adaptor complex	0.03	Archaeplastida
Zm00001e007492_P001	No alias	medium subunit mu of AP-4 vacuole cargo adaptor complex	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISS	Interproscan
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	ISS	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
BP	GO:0002790	peptide secretion	IEP	Neighborhood
MF	GO:0003756	protein disulfide isomerase activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004559	alpha-mannosidase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
CC	GO:0005774	vacuolar membrane	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005802	trans-Golgi network	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006491	N-glycan processing	IEP	Neighborhood
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006897	endocytosis	IEP	Neighborhood
BP	GO:0007032	endosome organization	IEP	Neighborhood
BP	GO:0007033	vacuole organization	IEP	Neighborhood
BP	GO:0007160	cell-matrix adhesion	IEP	Neighborhood
CC	GO:0008305	integrin complex	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009100	glycoprotein metabolic process	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
BP	GO:0009306	protein secretion	IEP	Neighborhood
CC	GO:0009504	cell plate	IEP	Neighborhood
MF	GO:0009678	hydrogen-translocating pyrophosphatase activity	IEP	Neighborhood
BP	GO:0009900	dehiscence	IEP	Neighborhood
BP	GO:0009901	anther dehiscence	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
MF	GO:0010427	abscisic acid binding	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
CC	GO:0012506	vesicle membrane	IEP	Neighborhood
CC	GO:0012510	trans-Golgi network transport vesicle membrane	IEP	Neighborhood
MF	GO:0015923	mannosidase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016050	vesicle organization	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0019840	isoprenoid binding	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
MF	GO:0019901	protein kinase binding	IEP	Neighborhood
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030244	cellulose biosynthetic process	IEP	Neighborhood
MF	GO:0030276	clathrin binding	IEP	Neighborhood
CC	GO:0030658	transport vesicle membrane	IEP	Neighborhood
CC	GO:0030659	cytoplasmic vesicle membrane	IEP	Neighborhood
CC	GO:0030660	Golgi-associated vesicle membrane	IEP	Neighborhood
CC	GO:0030662	coated vesicle membrane	IEP	Neighborhood
CC	GO:0030665	clathrin-coated vesicle membrane	IEP	Neighborhood
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
BP	GO:0031589	cell-substrate adhesion	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
MF	GO:0033293	monocarboxylic acid binding	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
CC	GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	IEP	Neighborhood
MF	GO:0042285	xylosyltransferase activity	IEP	Neighborhood
MF	GO:0042562	hormone binding	IEP	Neighborhood
BP	GO:0042732	D-xylose metabolic process	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
MF	GO:0043178	alcohol binding	IEP	Neighborhood
CC	GO:0043235	receptor complex	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
MF	GO:0043424	protein histidine kinase binding	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044437	vacuolar part	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Neighborhood
MF	GO:0048040	UDP-glucuronate decarboxylase activity	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	Neighborhood
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0080171	lytic vacuole organization	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098636	protein complex involved in cell adhesion	IEP	Neighborhood
BP	GO:0098657	import into cell	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
CC	GO:0098802	plasma membrane receptor complex	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1990019	protein storage vacuole organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR028565	MHD	184	374
IPR022775	AP_mu_sigma_su	2	133

External Links

No external refs found!

AT4G24550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation