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Description : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Gene families : OG0002788 (Archaeplastida) Phylogenetic Tree(s): OG0002788_tree ,
OG_05_0006456 (LandPlants) Phylogenetic Tree(s): OG_05_0006456_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c4_5190V3.1 | |
| Cluster | HCCA: Cluster_237 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G55200 | No alias | Cleavage and polyadenylation specificity factor (CPSF) A... | 0.04 | Archaeplastida | |
| AT3G55220 | No alias | Cleavage and polyadenylation specificity factor (CPSF) A... | 0.05 | Archaeplastida | |
| Cpa|evm.model.tig00001024.5 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | Archaeplastida | |
| Cpa|evm.model.tig00001024.6 | No alias | Spliceosome-associated protein 130 A OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| Cre08.g372800 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.06 | Archaeplastida | |
| GSVIVT01005970001 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.07 | Archaeplastida | |
| Gb_14411 | No alias | Spliceosome-associated protein 130 A OS=Arabidopsis... | 0.02 | Archaeplastida | |
| Gb_38044 | No alias | component SF3B3 of splicing factor 3B complex | 0.07 | Archaeplastida | |
| LOC_Os02g04480.1 | No alias | component SF3B3 of splicing factor 3B complex | 0.07 | Archaeplastida | |
| MA_10430596g0010 | No alias | component SF3B3 of splicing factor 3B complex | 0.02 | Archaeplastida | |
| Mp7g13330.1 | No alias | component SF3B3 of splicing factor 3B complex | 0.02 | Archaeplastida | |
| Smo171237 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| Solyc04g010260.3.1 | No alias | component SF3B3 of splicing factor 3B complex | 0.05 | Archaeplastida | |
| Zm00001e013611_P001 | No alias | component SF3B3 of splicing factor 3B complex | 0.06 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
| BP | GO:0008104 | protein localization | IEP | Neighborhood |
| MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
| MF | GO:0008536 | Ran GTPase binding | IEP | Neighborhood |
| BP | GO:0015031 | protein transport | IEP | Neighborhood |
| BP | GO:0015833 | peptide transport | IEP | Neighborhood |
| BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
| MF | GO:0017016 | Ras GTPase binding | IEP | Neighborhood |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
| MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
| CC | GO:0030117 | membrane coat | IEP | Neighborhood |
| CC | GO:0030118 | clathrin coat | IEP | Neighborhood |
| CC | GO:0030120 | vesicle coat | IEP | Neighborhood |
| CC | GO:0030125 | clathrin vesicle coat | IEP | Neighborhood |
| CC | GO:0030130 | clathrin coat of trans-Golgi network vesicle | IEP | Neighborhood |
| CC | GO:0030132 | clathrin coat of coated pit | IEP | Neighborhood |
| MF | GO:0031267 | small GTPase binding | IEP | Neighborhood |
| BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
| BP | GO:0042886 | amide transport | IEP | Neighborhood |
| CC | GO:0044431 | Golgi apparatus part | IEP | Neighborhood |
| CC | GO:0044433 | cytoplasmic vesicle part | IEP | Neighborhood |
| CC | GO:0044459 | plasma membrane part | IEP | Neighborhood |
| BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
| BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
| MF | GO:0051020 | GTPase binding | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
| BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
| BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
| CC | GO:0098797 | plasma membrane protein complex | IEP | Neighborhood |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |