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  5. AT4G39240

AT4G39240


Description : Galactose oxidase/kelch repeat superfamily protein


Gene families : OG0009464 (Archaeplastida) Phylogenetic Tree(s): OG0009464_tree ,
OG_05_0009494 (LandPlants) Phylogenetic Tree(s): OG_05_0009494_tree ,
OG_06_0007073 (SeedPlants) Phylogenetic Tree(s): OG_06_0007073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G39240
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
AT1G19460 No alias Galactose oxidase/kelch repeat superfamily protein 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000338 protein deneddylation IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
BP GO:0000902 cell morphogenesis IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004033 aldo-keto reductase (NADP) activity IEP Neighborhood
MF GO:0004161 dimethylallyltranstransferase activity IEP Neighborhood
MF GO:0004337 geranyltranstransferase activity IEP Neighborhood
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP Neighborhood
CC GO:0005697 telomerase holoenzyme complex IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
CC GO:0005881 cytoplasmic microtubule IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006268 DNA unwinding involved in DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
CC GO:0008180 COP9 signalosome IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008676 3-deoxy-8-phosphooctulonate synthase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
CC GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
CC GO:0010005 cortical microtubule, transverse to long axis IEP Neighborhood
BP GO:0010025 wax biosynthetic process IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010031 circumnutation IEP Neighborhood
BP GO:0010166 wax metabolic process IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP Neighborhood
BP GO:0010375 stomatal complex patterning IEP Neighborhood
BP GO:0010387 COP9 signalosome assembly IEP Neighborhood
BP GO:0010396 rhamnogalacturonan II metabolic process IEP Neighborhood
BP GO:0010496 intercellular transport IEP Neighborhood
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP Neighborhood
MF GO:0015562 efflux transmembrane transporter activity IEP Neighborhood
CC GO:0015630 microtubule cytoskeleton IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0018708 thiol S-methyltransferase activity IEP Neighborhood
BP GO:0019294 keto-3-deoxy-D-manno-octulosonic acid biosynthetic process IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
BP GO:0032206 positive regulation of telomere maintenance IEP Neighborhood
BP GO:0032210 regulation of telomere maintenance via telomerase IEP Neighborhood
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
BP GO:0045337 farnesyl diphosphate biosynthetic process IEP Neighborhood
BP GO:0045338 farnesyl diphosphate metabolic process IEP Neighborhood
BP GO:0045489 pectin biosynthetic process IEP Neighborhood
BP GO:0046400 keto-3-deoxy-D-manno-octulosonic acid metabolic process IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0050879 multicellular organismal movement IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
BP GO:0052325 cell wall pectin biosynthetic process IEP Neighborhood
CC GO:0055028 cortical microtubule IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
BP GO:1901570 fatty acid derivative biosynthetic process IEP Neighborhood
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP Neighborhood
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP Neighborhood
BP GO:2000278 regulation of DNA biosynthetic process IEP Neighborhood
BP GO:2000573 positive regulation of DNA biosynthetic process IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 34 78
IPR006652 Kelch_1 175 214
IPR006652 Kelch_1 132 172
No external refs found!