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  5. MA_10436625g0010

MA_10436625g0010


Description : RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana (sp|q9lqv2|rdr1_arath : 794.0)


Gene families : OG0000823 (Archaeplastida) Phylogenetic Tree(s): OG0000823_tree ,
OG_05_0002293 (LandPlants) Phylogenetic Tree(s): OG_05_0002293_tree ,
OG_06_0004327 (SeedPlants) Phylogenetic Tree(s): OG_06_0004327_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436625g0010
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011643001 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_08298 No alias RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_08306 No alias ssRNA polymerase (RDR6) 0.04 Archaeplastida
Gb_17277 No alias Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa... 0.03 Archaeplastida
Gb_17278 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_28433 No alias ssRNA polymerase (RDR2) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004143 diacylglycerol kinase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016180 snRNA processing IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034472 snRNA 3'-end processing IEP Neighborhood
BP GO:0034477 U6 snRNA 3'-end processing IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 28 597
No external refs found!