Description : RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana (sp|q9lqv2|rdr1_arath : 794.0)
Gene families : OG0000823 (Archaeplastida) Phylogenetic Tree(s): OG0000823_tree ,
OG_05_0002293 (LandPlants) Phylogenetic Tree(s): OG_05_0002293_tree ,
OG_06_0004327 (SeedPlants) Phylogenetic Tree(s): OG_06_0004327_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_10436625g0010 | |
Cluster | HCCA: Cluster_209 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01011643001 | No alias | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Gb_08298 | No alias | RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... | 0.02 | Archaeplastida | |
Gb_08306 | No alias | ssRNA polymerase (RDR6) | 0.04 | Archaeplastida | |
Gb_17277 | No alias | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa... | 0.03 | Archaeplastida | |
Gb_17278 | No alias | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida | |
Gb_28433 | No alias | ssRNA polymerase (RDR2) | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003968 | RNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
MF | GO:0004143 | diacylglycerol kinase activity | IEP | Neighborhood |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Neighborhood |
MF | GO:0005516 | calmodulin binding | IEP | Neighborhood |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
BP | GO:0007186 | G-protein coupled receptor signaling pathway | IEP | Neighborhood |
BP | GO:0007205 | protein kinase C-activating G-protein coupled receptor signaling pathway | IEP | Neighborhood |
BP | GO:0016073 | snRNA metabolic process | IEP | Neighborhood |
BP | GO:0016180 | snRNA processing | IEP | Neighborhood |
CC | GO:0016592 | mediator complex | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0034472 | snRNA 3'-end processing | IEP | Neighborhood |
BP | GO:0034477 | U6 snRNA 3'-end processing | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
MF | GO:0043531 | ADP binding | IEP | Neighborhood |
BP | GO:0043628 | ncRNA 3'-end processing | IEP | Neighborhood |
BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
BP | GO:0065007 | biological regulation | IEP | Neighborhood |
MF | GO:0070566 | adenylyltransferase activity | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007855 | RNA-dep_RNA_pol_euk-typ | 28 | 597 |
No external refs found! |