MA_19871g0020

Description : component RPS23 of SSU proteome

Gene families : OG0001653 (Archaeplastida) Phylogenetic Tree(s): OG0001653_tree ,
OG_05_0002025 (LandPlants) Phylogenetic Tree(s): OG_05_0002025_tree ,
OG_06_0002565 (SeedPlants) Phylogenetic Tree(s): OG_06_0002565_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_19871g0020
Cluster	HCCA: Cluster_339

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00204160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
AT3G09680	No alias	Ribosomal protein S12/S23 family protein	0.02	Archaeplastida
AT5G02960	No alias	Ribosomal protein S12/S23 family protein	0.17	Archaeplastida
Cpa\|evm.model.tig00001264.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Cre12.g504200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	Archaeplastida
GSVIVT01016341001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
GSVIVT01025120001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	Archaeplastida
GSVIVT01025626001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
Gb_02361	No alias	component RPS23 of SSU proteome	0.09	Archaeplastida
Gb_36570	No alias	component RPS23 of SSU proteome	0.06	Archaeplastida
LOC_Os01g61814.1	No alias	component RPS23 of SSU proteome	0.14	Archaeplastida
LOC_Os03g60400.1	No alias	component RPS23 of SSU proteome	0.17	Archaeplastida
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.19	Archaeplastida
Pp3c11_11070V3.1	No alias	Ribosomal protein S12/S23 family protein	0.08	Archaeplastida
Pp3c12_25120V3.1	No alias	Ribosomal protein S12/S23 family protein	0.05	Archaeplastida
Pp3c2_24130V3.1	No alias	Ribosomal protein S12/S23 family protein	0.11	Archaeplastida
Pp3c4_3120V3.1	No alias	Ribosomal protein S12/S23 family protein	0.07	Archaeplastida
Pp3c7_14200V3.1	No alias	Ribosomal protein S12/S23 family protein	0.09	Archaeplastida
Smo145246	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Solyc09g007350.3.1	No alias	component RPS23 of SSU proteome	0.09	Archaeplastida
Solyc10g084310.2.1	No alias	component RPS23 of SSU proteome	0.09	Archaeplastida
Solyc10g086020.3.1	No alias	component RPS23 of SSU proteome	0.17	Archaeplastida
Zm00001e006170_P001	No alias	component RPS23 of SSU proteome	0.18	Archaeplastida
Zm00001e011770_P001	No alias	component RPS23 of SSU proteome	0.07	Archaeplastida
Zm00001e019377_P001	No alias	component RPS23 of SSU proteome	0.13	Archaeplastida
Zm00001e027265_P001	No alias	component RPS23 of SSU proteome	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006480	N-terminal protein amino acid methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Neighborhood
MF	GO:0019238	cyclohydrolase activity	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
MF	GO:0060590	ATPase regulator activity	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	31	141

External Links

No external refs found!

MA_19871g0020

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation