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  5. AT5G42340

AT5G42340 (PUB15)


Aliases : PUB15

Description : Plant U-Box 15


Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000670 (LandPlants) Phylogenetic Tree(s): OG_05_0000670_tree ,
OG_06_0006387 (SeedPlants) Phylogenetic Tree(s): OG_06_0006387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42340
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 evm_27.TU.AmTr_v1... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.06 Archaeplastida
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT5G01830 No alias ARM repeat superfamily protein 0.03 Archaeplastida
GSVIVT01009896001 No alias U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016225001 No alias U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01024985001 No alias U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_10627 No alias U-box domain-containing protein 13 OS=Arabidopsis... 0.02 Archaeplastida
Gb_12875 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Gb_13754 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Gb_29276 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
LOC_Os05g39930.1 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os06g51130.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.08 Archaeplastida
LOC_Os08g37570.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.1 Archaeplastida
LOC_Os12g38210.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
MA_27512g0010 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
MA_29517g0010 No alias U-box domain-containing protein 12 OS=Oryza sativa... 0.03 Archaeplastida
MA_9917294g0010 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida
Pp3c23_15760V3.1 No alias plant U-box 13 0.02 Archaeplastida
Pp3c23_8770V3.1 No alias plant U-box 14 0.03 Archaeplastida
Pp3c9_17047V3.1 No alias plant U-box 13 0.03 Archaeplastida
Smo113592 No alias U-box domain-containing protein 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo231208 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo415326 No alias U-box domain-containing protein 1 OS=Medicago truncatula 0.02 Archaeplastida
Smo75609 No alias U-box domain-containing protein 1 OS=Medicago truncatula 0.02 Archaeplastida
Solyc04g082440.4.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.06 Archaeplastida
Solyc11g008390.2.1 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida
Solyc11g066040.2.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Solyc12g094610.3.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.1 Archaeplastida
Zm00001e002954_P001 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Zm00001e003398_P001 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e013323_P001 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e014566_P002 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Zm00001e019429_P001 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e031915_P001 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0030048 actin filament-based movement RCA Interproscan
BP GO:0048868 pollen tube development RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0000904 cell morphogenesis involved in differentiation IEP Neighborhood
BP GO:0001558 regulation of cell growth IEP Neighborhood
BP GO:0002238 response to molecule of fungal origin IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004143 diacylglycerol kinase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005451 monovalent cation:proton antiporter activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
BP GO:0006828 manganese ion transport IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
BP GO:0006885 regulation of pH IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009827 plant-type cell wall modification IEP Neighborhood
BP GO:0009860 pollen tube growth IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
BP GO:0010351 lithium ion transport IEP Neighborhood
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0015385 sodium:proton antiporter activity IEP Neighborhood
MF GO:0015491 cation:cation antiporter activity IEP Neighborhood
CC GO:0015629 actin cytoskeleton IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015691 cadmium ion transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
CC GO:0016324 apical plasma membrane IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022604 regulation of cell morphogenesis IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0035725 sodium ion transmembrane transport IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0045595 regulation of cell differentiation IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046910 pectinesterase inhibitor activity IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0051017 actin filament bundle assembly IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051510 regulation of unidimensional cell growth IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0060284 regulation of cell development IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0061572 actin filament bundle organization IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080092 regulation of pollen tube growth IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0099516 ion antiporter activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003613 Ubox_domain 291 360
IPR000225 Armadillo 410 449
IPR000225 Armadillo 494 531
IPR000225 Armadillo 533 569
No external refs found!