LOC_Os02g02290.1

Description : ATP-dependent helicase BRM OS=Arabidopsis thaliana (sp|q6evk6|brm_arath : 1739.0)

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0005281 (LandPlants) Phylogenetic Tree(s): OG_05_0005281_tree ,
OG_06_0004708 (SeedPlants) Phylogenetic Tree(s): OG_06_0004708_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g02290.1
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00216420	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
AMTR_s00053p00098350	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.03	Archaeplastida
AMTR_s00148p00090060	evm_27.TU.AmTr_v1...	Helicase protein MOM1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.04	Archaeplastida
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
AT3G06010	ATCHR12	Homeotic gene regulator	0.03	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.03	Archaeplastida
Cpa\|evm.model.tig00000350.9	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
Cre08.g377200	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Archaeplastida
GSVIVT01012117001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.03	Archaeplastida
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
GSVIVT01017921001	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01035901001	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Gb_16888	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Gb_27153	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
MA_102992g0020	No alias	Probable chromatin-remodeling complex ATPase chain...	0.03	Archaeplastida
MA_10427682g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_10436824g0010	No alias	No annotation	0.03	Archaeplastida
MA_137856g0010	No alias	chromatin remodeling factor (Snf2)	0.04	Archaeplastida
MA_141135g0010	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
MA_470488g0010	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_8926002g0010	No alias	Chromatin structure-remodeling complex protein SYD...	0.03	Archaeplastida
MA_9572741g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp1g07380.1	No alias	CHD3-type chromatin-remodeling factor CHR7...	0.02	Archaeplastida
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Mp8g17660.1	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.03	Archaeplastida
Pp3c13_19680V3.1	No alias	chromatin remodeling 4	0.04	Archaeplastida
Pp3c14_90V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Archaeplastida
Pp3c15_6140V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
Pp3c18_19045V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.02	Archaeplastida
Smo102849	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo110395	No alias	Chromatin organisation.DNA methylation.RNA-independent...	0.03	Archaeplastida
Smo155996	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Solyc01g094800.4.1	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Solyc02g062780.4.1	No alias	chromatin remodeling factor (DDM1)	0.02	Archaeplastida
Solyc02g068560.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Solyc06g010240.3.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc06g065730.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Solyc08g029130.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Solyc11g062010.3.1	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Solyc12g099910.2.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Zm00001e030969_P003	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Zm00001e039130_P001	No alias	Probable plastid-lipid-associated protein 8,...	0.02	Archaeplastida
Zm00001e040406_P002	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003909	DNA ligase activity	IEP	Neighborhood
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006505	GPI anchor metabolic process	IEP	Neighborhood
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0006664	glycolipid metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009247	glycolipid biosynthetic process	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0061505	DNA topoisomerase II activity	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1903509	liposaccharide metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	975	1028
IPR001650	Helicase_C	1298	1407
IPR014978	Gln-Leu-Gln_QLQ	442	475
IPR000330	SNF2_N	1031	1189

External Links

No external refs found!

LOC_Os02g02290.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation