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Description : component Sm-F of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex
Gene families : OG0001499 (Archaeplastida) Phylogenetic Tree(s): OG0001499_tree ,
OG_05_0005319 (LandPlants) Phylogenetic Tree(s): OG_05_0005319_tree ,
OG_06_0007982 (SeedPlants) Phylogenetic Tree(s): OG_06_0007982_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os02g08090.1 | |
| Cluster | HCCA: Cluster_333 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G59810 | No alias | Small nuclear ribonucleoprotein family protein | 0.04 | Archaeplastida | |
| AT4G30220 | RUXF | small nuclear ribonucleoprotein F | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00001355.5 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.04 | Archaeplastida | |
| Cre03.g151750 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.03 | Archaeplastida | |
| Cre05.g241300 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | Archaeplastida | |
| GSVIVT01003994001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | Archaeplastida | |
| MA_26016g0010 | No alias | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.02 | Archaeplastida | |
| Mp6g01610.1 | No alias | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.03 | Archaeplastida | |
| Pp3c12_17630V3.1 | No alias | small nuclear ribonucleoprotein F | 0.03 | Archaeplastida | |
| Smo228181 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | Archaeplastida | |
| Smo268399 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.04 | Archaeplastida | |
| Zm00001e025108_P001 | No alias | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0004497 | monooxygenase activity | IEP | Neighborhood |
| MF | GO:0004499 | N,N-dimethylaniline monooxygenase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005787 | signal peptidase complex | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006465 | signal peptide processing | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006605 | protein targeting | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| BP | GO:0016485 | protein processing | IEP | Neighborhood |
| CC | GO:0016592 | mediator complex | IEP | Neighborhood |
| MF | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| MF | GO:0030515 | snoRNA binding | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| MF | GO:0050661 | NADP binding | IEP | Neighborhood |
| BP | GO:0051604 | protein maturation | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1905368 | peptidase complex | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 11 | 55 |
| No external refs found! |