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  5. LOC_Os02g10080.1

LOC_Os02g10080.1


Description : C3H zinc finger transcription factor


Gene families : OG0001099 (Archaeplastida) Phylogenetic Tree(s): OG0001099_tree ,
OG_05_0001093 (LandPlants) Phylogenetic Tree(s): OG_05_0001093_tree ,
OG_06_0001843 (SeedPlants) Phylogenetic Tree(s): OG_06_0001843_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g10080.1
Cluster HCCA: Cluster_346

Target Alias Description ECC score Gene Family Method Actions
AT3G12130 No alias KH domain-containing protein / zinc finger (CCCH type)... 0.02 Archaeplastida
Gb_25567 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
MA_159838g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_26803g0010 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
MA_68032g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_83924g0010 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Solyc01g073940.3.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Solyc03g063200.3.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Zm00001e006629_P001 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Zm00001e037586_P002 No alias C3H zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004376 glycolipid mannosyltransferase activity IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 173 236
IPR000571 Znf_CCCH 266 291
IPR000571 Znf_CCCH 101 126
No external refs found!