LOC_Os02g41670.1


Description : phenylalanine ammonia lyase (PAL)


Gene families : OG0000239 (Archaeplastida) Phylogenetic Tree(s): OG0000239_tree ,
OG_05_0000119 (LandPlants) Phylogenetic Tree(s): OG_05_0000119_tree ,
OG_06_0000357 (SeedPlants) Phylogenetic Tree(s): OG_06_0000357_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g41670.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00201680 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.05 Archaeplastida
AMTR_s00024p00201930 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 Archaeplastida
AMTR_s00024p00202590 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 Archaeplastida
AMTR_s00032p00159210 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 Archaeplastida
AMTR_s00148p00088930 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.06 Archaeplastida
AT2G37040 ATPAL1, PAL1 PHE ammonia lyase 1 0.07 Archaeplastida
AT3G10340 PAL4 phenylalanine ammonia-lyase 4 0.04 Archaeplastida
GSVIVT01006148001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 Archaeplastida
GSVIVT01015123001 No alias Phenylalanine ammonia-lyase OS=Pinus taeda 0.07 Archaeplastida
GSVIVT01015124001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.08 Archaeplastida
GSVIVT01015138001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.07 Archaeplastida
GSVIVT01024292001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.05 Archaeplastida
GSVIVT01024293001 No alias Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen... 0.03 Archaeplastida
GSVIVT01024294001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.07 Archaeplastida
GSVIVT01024295001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.05 Archaeplastida
GSVIVT01024299001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 Archaeplastida
GSVIVT01024306001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 Archaeplastida
GSVIVT01024315001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 Archaeplastida
GSVIVT01025214001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 Archaeplastida
GSVIVT01025703001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.07 Archaeplastida
Gb_10978 No alias phenylalanine ammonia lyase (PAL) 0.03 Archaeplastida
Gb_16672 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
Gb_21115 No alias phenylalanine ammonia lyase (PAL) 0.06 Archaeplastida
Gb_31408 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
Gb_41796 No alias phenylalanine ammonia lyase (PAL) 0.05 Archaeplastida
LOC_Os02g41630.2 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
LOC_Os04g43760.1 No alias phenylalanine ammonia lyase (PAL) 0.05 Archaeplastida
LOC_Os04g43800.1 No alias phenylalanine ammonia lyase (PAL) 0.03 Archaeplastida
MA_123220g0010 No alias phenylalanine ammonia lyase (PAL) 0.03 Archaeplastida
MA_15852g0010 No alias phenylalanine ammonia lyase (PAL) 0.02 Archaeplastida
MA_189052g0010 No alias Phenylalanine ammonia-lyase OS=Pinus taeda... 0.02 Archaeplastida
MA_632036g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_73113g0010 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
Mp1g05190.1 No alias phenylalanine ammonia lyase (PAL) 0.05 Archaeplastida
Mp4g10060.1 No alias phenylalanine ammonia lyase (PAL) 0.02 Archaeplastida
Mp4g14110.1 No alias phenylalanine ammonia lyase (PAL) 0.02 Archaeplastida
Mp4g14140.1 No alias phenylalanine ammonia lyase (PAL) 0.06 Archaeplastida
Mp4g14160.1 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
Mp4g14170.1 No alias phenylalanine ammonia lyase (PAL) 0.03 Archaeplastida
Mp4g14210.1 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
Mp7g14880.1 No alias phenylalanine ammonia lyase (PAL) 0.03 Archaeplastida
Pp3c10_21810V3.1 No alias phenylalanine ammonia-lyase 4 0.08 Archaeplastida
Pp3c13_9000V3.1 No alias phenylalanine ammonia-lyase 4 0.05 Archaeplastida
Pp3c14_11870V3.1 No alias PHE ammonia lyase 1 0.04 Archaeplastida
Pp3c19_13690V3.1 No alias phenylalanine ammonia-lyase 4 0.04 Archaeplastida
Pp3c1_18680V3.1 No alias phenyl alanine ammonia-lyase 3 0.02 Archaeplastida
Pp3c1_18830V3.1 No alias PHE ammonia lyase 1 0.05 Archaeplastida
Pp3c1_18940V3.1 No alias PHE ammonia lyase 1 0.03 Archaeplastida
Pp3c21_7640V3.1 No alias phenylalanine ammonia-lyase 2 0.04 Archaeplastida
Pp3c21_7670V3.1 No alias phenylalanine ammonia-lyase 4 0.02 Archaeplastida
Pp3c21_7680V3.1 No alias phenylalanine ammonia-lyase 4 0.04 Archaeplastida
Pp3c24_13110V3.1 No alias phenylalanine ammonia-lyase 4 0.07 Archaeplastida
Pp3c2_30610V3.1 No alias phenylalanine ammonia-lyase 4 0.05 Archaeplastida
Pp3c2_32330V3.1 No alias phenylalanine ammonia-lyase 4 0.08 Archaeplastida
Pp3c2_32410V3.1 No alias phenylalanine ammonia-lyase 4 0.03 Archaeplastida
Solyc00g500095.1.1 No alias phenylalanine ammonia lyase (PAL) 0.05 Archaeplastida
Solyc00g500353.1.1 No alias phenylalanine ammonia lyase (PAL) 0.06 Archaeplastida
Solyc03g042560.3.1 No alias phenylalanine ammonia lyase (PAL) 0.06 Archaeplastida
Solyc03g078280.3.1 No alias Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... 0.04 Archaeplastida
Solyc05g056170.3.1 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
Solyc09g007910.4.1 No alias phenylalanine ammonia lyase (PAL) 0.06 Archaeplastida
Solyc10g011925.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc10g086180.2.1 No alias phenylalanine ammonia lyase (PAL) 0.03 Archaeplastida
Zm00001e005064_P001 No alias phenylalanine ammonia lyase (PAL) 0.07 Archaeplastida
Zm00001e015155_P001 No alias phenylalanine ammonia lyase (PAL) 0.05 Archaeplastida
Zm00001e015156_P001 No alias phenylalanine ammonia lyase (PAL) 0.03 Archaeplastida
Zm00001e023032_P002 No alias phenylalanine ammonia lyase (PAL) 0.04 Archaeplastida
Zm00001e023033_P001 No alias phenylalanine ammonia lyase (PAL) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001106 Aromatic_Lyase 62 530
No external refs found!