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  5. LOC_Os03g08050.1

LOC_Os03g08050.1


Description : aminoacyl-tRNA binding factor (eEF1A)


Gene families : OG0000191 (Archaeplastida) Phylogenetic Tree(s): OG0000191_tree ,
OG_05_0000317 (LandPlants) Phylogenetic Tree(s): OG_05_0000317_tree ,
OG_06_0000423 (SeedPlants) Phylogenetic Tree(s): OG_06_0000423_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g08050.1
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00216110 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.03 Archaeplastida
AMTR_s00066p00072310 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.06 Archaeplastida
AT1G07920 No alias GTP binding Elongation factor Tu family protein 0.05 Archaeplastida
AT1G07930 No alias GTP binding Elongation factor Tu family protein 0.03 Archaeplastida
AT1G07940 No alias GTP binding Elongation factor Tu family protein 0.04 Archaeplastida
AT5G60390 No alias GTP binding Elongation factor Tu family protein 0.2 Archaeplastida
Cpa|evm.model.tig00021352.57 No alias Protein biosynthesis.translation elongation.eEF1A... 0.06 Archaeplastida
Cre06.g284750 No alias Protein biosynthesis.translation termination.eRF3... 0.08 Archaeplastida
Cre12.g498600 No alias Elongation factor 1-alpha OS=Glycine max 0.01 Archaeplastida
GSVIVT01025638001 No alias Elongation factor 1-alpha OS=Zea mays 0.04 Archaeplastida
Gb_17471 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Gb_22919 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
MA_651220g0010 No alias Elongation factor 1-alpha OS=Oryza sativa subsp.... 0.04 Archaeplastida
MA_7085077g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.19 Archaeplastida
Pp3c1_23850V3.1 No alias GTP binding Elongation factor Tu family protein 0.06 Archaeplastida
Pp3c1_23920V3.1 No alias GTP binding Elongation factor Tu family protein 0.13 Archaeplastida
Pp3c27_2160V3.1 No alias Translation elongation factor EF1A/initiation factor... 0.02 Archaeplastida
Pp3c2_6650V3.1 No alias GTP binding Elongation factor Tu family protein 0.04 Archaeplastida
Pp3c2_6770V3.1 No alias GTP binding Elongation factor Tu family protein 0.04 Archaeplastida
Smo115313 No alias Protein biosynthesis.translation termination.eRF3... 0.02 Archaeplastida
Smo169717 No alias Protein biosynthesis.translation elongation.eEF1A... 0.04 Archaeplastida
Smo171512 No alias Protein biosynthesis.translation elongation.eEF1A... 0.06 Archaeplastida
Smo270693 No alias Protein biosynthesis.translation elongation.eEF1A... 0.05 Archaeplastida
Solyc06g005060.3.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.1 Archaeplastida
Solyc06g009970.3.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
Solyc06g069020.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g069097.1.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.02 Archaeplastida
Solyc11g150146.1.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Zm00001e026762_P001 No alias aminoacyl-tRNA binding factor (eEF1A) 0.13 Archaeplastida
Zm00001e026763_P003 No alias aminoacyl-tRNA binding factor (eEF1A) 0.11 Archaeplastida
Zm00001e030598_P002 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Zm00001e031389_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e031390_P004 No alias aminoacyl-tRNA binding factor (eEF1A) 0.12 Archaeplastida
Zm00001e031391_P002 No alias aminoacyl-tRNA binding factor (eEF1A) 0.09 Archaeplastida
Zm00001e031407_P001 No alias aminoacyl-tRNA binding factor (eEF1A) 0.08 Archaeplastida
Zm00001e037355_P001 No alias aminoacyl-tRNA binding factor (eEF1A) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 322 429
IPR000795 TF_GTP-bd_dom 5 222
IPR004161 EFTu-like_2 248 313
No external refs found!