LOC_Os03g13170.1

Description : component RPL40 of LSU proteome component

Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g13170.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
AMTR_s00040p00104050	evm_27.TU.AmTr_v1...	Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris	0.05	Archaeplastida
AMTR_s00095p00146440	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AT1G23410	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.04	Archaeplastida
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.2	Archaeplastida
AT2G47110	UBQ6	ubiquitin 6	0.16	Archaeplastida
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.22	Archaeplastida
AT3G62250	UBQ5	ubiquitin 5	0.17	Archaeplastida
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
Cre01.g007051	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
Cre06.g273600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	Archaeplastida
GSVIVT01012906001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.13	Archaeplastida
GSVIVT01022543001	No alias	Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum	0.08	Archaeplastida
GSVIVT01028198001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.1	Archaeplastida
GSVIVT01033876001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
Gb_01257	No alias	component RPL40 of LSU proteome component	0.03	Archaeplastida
Gb_15027	No alias	component RPS27a of SSU proteome	0.11	Archaeplastida
Gb_40288	No alias	component RPS27a of SSU proteome	0.08	Archaeplastida
Gb_41257	No alias	component RPL40 of LSU proteome component	0.12	Archaeplastida
MA_10435699g0020	No alias	component RPS27a of SSU proteome	0.02	Archaeplastida
MA_13101g0020	No alias	component RPL40 of LSU proteome component	0.11	Archaeplastida
MA_529552g0010	No alias	component RPS27a of SSU proteome	0.09	Archaeplastida
MA_9129425g0010	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
Mp7g12490.1	No alias	component RPL40 of LSU proteome component	0.02	Archaeplastida
Mp7g12760.1	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida
Mp7g14690.1	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.1	Archaeplastida
Pp3c10_25270V3.1	No alias	ubiquitin extension protein 1	0.17	Archaeplastida
Pp3c12_5640V3.1	No alias	ubiquitin 6	0.1	Archaeplastida
Pp3c12_5760V3.1	No alias	ubiquitin 6	0.12	Archaeplastida
Pp3c20_23170V3.1	No alias	ubiquitin extension protein 1	0.16	Archaeplastida
Pp3c24_430V3.1	No alias	ubiquitin extension protein 1	0.17	Archaeplastida
Pp3c3_25480V3.1	No alias	ubiquitin extension protein 1	0.16	Archaeplastida
Pp3c4_11930V3.1	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.12	Archaeplastida
Pp3c4_19000V3.1	No alias	ubiquitin 6	0.15	Archaeplastida
Pp3c8_14230V3.1	No alias	ubiquitin 6	0.11	Archaeplastida
Smo111605	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Solyc01g068045.1.1	No alias	component RPS27a of SSU proteome	0.19	Archaeplastida
Solyc01g096290.4.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc03g082570.4.1	No alias	component RPL40 of LSU proteome component	0.13	Archaeplastida
Solyc08g008590.4.1	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
Solyc08g083120.3.1	No alias	component RPL40 of LSU proteome component	0.17	Archaeplastida
Solyc12g098940.2.1	No alias	component RPS27a of SSU proteome	0.18	Archaeplastida
Solyc12g099025.1.1	No alias	component RPS27a of SSU proteome	0.15	Archaeplastida
Zm00001e000962_P001	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
Zm00001e009474_P001	No alias	component RPL40 of LSU proteome component	0.03	Archaeplastida
Zm00001e026237_P001	No alias	component RPS27a of SSU proteome	0.19	Archaeplastida
Zm00001e028916_P001	No alias	component RPS27a of SSU proteome	0.2	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005787	signal peptidase complex	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006465	signal peptide processing	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0016272	prefoldin complex	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
CC	GO:0035145	exon-exon junction complex	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin_dom	3	74
IPR001975	Ribosomal_L40e	78	127

External Links

No external refs found!

LOC_Os03g13170.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation