LOC_Os03g25430.1

Description : transcription factor (GeBP)

Gene families : OG0001559 (Archaeplastida) Phylogenetic Tree(s): OG0001559_tree ,
OG_05_0001004 (LandPlants) Phylogenetic Tree(s): OG_05_0001004_tree ,
OG_06_0000781 (SeedPlants) Phylogenetic Tree(s): OG_06_0000781_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g25430.1
Cluster	HCCA: Cluster_161

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00195010	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GeBP...	0.03	Archaeplastida
AT2G25650	No alias	DNA-binding storekeeper protein-related transcriptional regulator	0.03	Archaeplastida
AT4G00270	No alias	DNA-binding storekeeper protein-related transcriptional regulator	0.03	Archaeplastida
AT5G28040	No alias	DNA-binding storekeeper protein-related transcriptional regulator	0.03	Archaeplastida
Solyc01g097890.2.1	No alias	transcription factor (GeBP)	0.02	Archaeplastida
Zm00001e001793_P001	No alias	transcription factor (GeBP)	0.1	Archaeplastida
Zm00001e038144_P001	No alias	transcription factor (GeBP)	0.11	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Neighborhood
CC	GO:0000930	gamma-tubulin complex	IEP	Neighborhood
CC	GO:0000931	gamma-tubulin large complex	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
CC	GO:0005666	RNA polymerase III complex	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006383	transcription by RNA polymerase III	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
CC	GO:0008274	gamma-tubulin ring complex	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
CC	GO:0030880	RNA polymerase complex	IEP	Neighborhood
BP	GO:0031503	protein-containing complex localization	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033566	gamma-tubulin complex localization	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034629	cellular protein-containing complex localization	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044450	microtubule organizing center part	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007592	GEBP	83	180

External Links

No external refs found!

LOC_Os03g25430.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation