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  5. LOC_Os04g34940.1

LOC_Os04g34940.1


Description : component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase P complex


Gene families : OG0000895 (Archaeplastida) Phylogenetic Tree(s): OG0000895_tree ,
OG_05_0000703 (LandPlants) Phylogenetic Tree(s): OG_05_0000703_tree ,
OG_06_0000624 (SeedPlants) Phylogenetic Tree(s): OG_06_0000624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g34940.1
Cluster HCCA: Cluster_350

Target Alias Description ECC score Gene Family Method Actions
AT1G20220 No alias Alba DNA/RNA-binding protein 0.03 Archaeplastida
Cpa|evm.model.tig00000842.55 No alias RNA processing.ribonuclease activities.RNase P... 0.02 Archaeplastida
GSVIVT01022283001 No alias RNA processing.ribonuclease activities.RNase P... 0.03 Archaeplastida
GSVIVT01028565001 No alias RNA processing.ribonuclease activities.RNase P... 0.03 Archaeplastida
Solyc06g083540.4.1 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.04 Archaeplastida
Zm00001e001541_P001 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.03 Archaeplastida
Zm00001e005588_P002 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.12 Archaeplastida
Zm00001e012088_P003 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.07 Archaeplastida
Zm00001e039020_P004 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 19 81
No external refs found!