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  5. LOC_Os05g47850.1

LOC_Os05g47850.1


Description : CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays (sp|a7xn92|cfm3_maize : 443.0)


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0001068 (SeedPlants) Phylogenetic Tree(s): OG_06_0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g47850.1
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.02 Archaeplastida
AMTR_s00079p00185530 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.13 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.15 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.16 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.02 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Archaeplastida
Cre14.g630301 No alias No description available 0.02 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.1 Archaeplastida
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
Gb_18301 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
Gb_18302 No alias CRM-domain containing factor CFM2, chloroplastic... 0.04 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.08 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.04 Archaeplastida
Gb_39217 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.06 Archaeplastida
MA_130902g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.02 Archaeplastida
MA_8161870g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Pp3c12_15870V3.1 No alias CRM family member 2 0.02 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.1 Archaeplastida
Pp3c7_23880V3.1 No alias CRM family member 2 0.02 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.14 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.14 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.11 Archaeplastida
Zm00001e011272_P001 No alias CFM3-type plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.1 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.09 Archaeplastida
Zm00001e041033_P001 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e041034_P001 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 186 268
IPR001890 RNA-binding_CRM 599 685
IPR001890 RNA-binding_CRM 387 471
No external refs found!