LOC_Os06g12080.1

Description : transcription factor (mTERF)

Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g12080.1
Cluster	HCCA: Cluster_336

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00116710	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00235420	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00126p00036130	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00126p00036170	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00126p00036560	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s01293p00010460	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01017772001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01036787001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Gb_00751	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_06120	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	Archaeplastida
Gb_07257	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	Archaeplastida
Gb_12368	No alias	transcription factor (mTERF)	0.05	Archaeplastida
Gb_12969	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_14091	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_15878	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_24665	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_26175	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Gb_26176	No alias	transcription factor (mTERF)	0.05	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_28540g0010	No alias	transcription factor (mTERF)	0.01	Archaeplastida
MA_31885g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_508g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_714651g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Zm00001e031638_P001	No alias	transcription factor (mTERF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000781	chromosome, telomeric region	IEP	Neighborhood
CC	GO:0000784	nuclear chromosome, telomeric region	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
MF	GO:0009982	pseudouridine synthase activity	IEP	Neighborhood
BP	GO:0010498	proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016866	intramolecular transferase activity	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0030163	protein catabolic process	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
CC	GO:0098687	chromosomal region	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	81	350

External Links

No external refs found!

LOC_Os06g12080.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation