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  5. LOC_Os09g10770.1

LOC_Os09g10770.1


Description : DNA topoisomerase 6 subunit B OS=Oryza sativa subsp. japonica (sp|q6h442|top6b_orysj : 1249.0)


Gene families : OG0006404 (Archaeplastida) Phylogenetic Tree(s): OG0006404_tree ,
OG_05_0007922 (LandPlants) Phylogenetic Tree(s): OG_05_0007922_tree ,
OG_06_0008334 (SeedPlants) Phylogenetic Tree(s): OG_06_0008334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g10770.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01025336001 No alias DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana 0.02 Archaeplastida
Pp3c22_12720V3.1 No alias topoisomerase 6 subunit B 0.02 Archaeplastida
Zm00001e033688_P003 No alias DNA topoisomerase 6 subunit B OS=Oryza sativa subsp.... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0071586 CAAX-box protein processing IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR015320 TopoVI_B_transducer 425 583
No external refs found!