LOC_Os11g09990.1


Description : transcription factor (mTERF)


Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g09990.1
Cluster HCCA: Cluster_336

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00225110 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s00060p00059830 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
GSVIVT01017772001 No alias RNA biosynthesis.organelle... 0.03 Archaeplastida
GSVIVT01028380001 No alias RNA biosynthesis.organelle... 0.04 Archaeplastida
Gb_00751 No alias transcription factor (mTERF) 0.02 Archaeplastida
Gb_26176 No alias transcription factor (mTERF) 0.03 Archaeplastida
MA_31885g0010 No alias transcription factor (mTERF) 0.02 Archaeplastida
MA_57842g0010 No alias transcription factor (mTERF) 0.03 Archaeplastida
Solyc04g011700.2.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
Zm00001e018894_P001 No alias transcription factor (mTERF) 0.06 Archaeplastida
Zm00001e031638_P001 No alias transcription factor (mTERF) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003690 MTERF 96 358
No external refs found!