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  5. LOC_Os12g13570.1

LOC_Os12g13570.1


Description : transcription factor (MYB)


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000288 (LandPlants) Phylogenetic Tree(s): OG_05_0000288_tree ,
OG_06_0002939 (SeedPlants) Phylogenetic Tree(s): OG_06_0002939_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g13570.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00252990 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
AMTR_s00109p00061950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.16 Archaeplastida
AT2G39880 AtMYB25, MYB25 myb domain protein 25 0.03 Archaeplastida
AT4G38620 ATMYB4, MYB4 myb domain protein 4 0.02 Archaeplastida
AT5G11510 AtMYB3R4, MYB3R-4 myb domain protein 3r-4 0.25 Archaeplastida
Cpa|evm.model.tig00020780.48 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Cre02.g103450 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Cre07.g345350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
Cre12.g522400 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01010006001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01015370001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.19 Archaeplastida
GSVIVT01025269001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01032088001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01035663001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.33 Archaeplastida
LOC_Os01g18240.1 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_9483804g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
Mp1g08640.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Pp3c10_10240V3.1 No alias Homeodomain-like protein 0.09 Archaeplastida
Pp3c14_14040V3.1 No alias Homeodomain-like protein 0.02 Archaeplastida
Pp3c15_24080V3.1 No alias myb domain protein 33 0.02 Archaeplastida
Pp3c2_250V3.1 No alias No annotation 0.01 Archaeplastida
Smo80215 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
Solyc01g087130.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc01g090530.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc08g068320.3.1 No alias transcription factor (MYB) 0.07 Archaeplastida
Solyc08g080580.4.1 No alias transcription factor (MYB) 0.06 Archaeplastida
Solyc08g081500.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc11g071300.2.1 No alias transcription factor (MYB) 0.19 Archaeplastida
Zm00001e016403_P001 No alias no hits & (original description: none) 0.26 Archaeplastida
Zm00001e017428_P003 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e031356_P001 No alias transcription factor (MYB) 0.07 Archaeplastida
Zm00001e040265_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e040384_P001 No alias transcription factor (MYB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 55 101
No external refs found!