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  5. Smo137887

Smo137887


Description : 50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula


Gene families : OG0002172 (Archaeplastida) Phylogenetic Tree(s): OG0002172_tree ,
OG_05_0002418 (LandPlants) Phylogenetic Tree(s): OG_05_0002418_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo137887
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02809p00000680 evm_27.TU.AmTr_v1... 50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda 0.05 Archaeplastida
ATCG00790 RPL16 ribosomal protein L16 0.08 Archaeplastida
LOC_Os01g57958.1 No alias 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.11 Archaeplastida
LOC_Os04g16826.1 No alias 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.11 Archaeplastida
LOC_Os10g21344.1 No alias 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.11 Archaeplastida
LOC_Os12g34128.1 No alias component mtRPL16 of large ribosomal subunit proteome 0.05 Archaeplastida
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.04 Archaeplastida
Pp3c2_23477V3.1 No alias ribosomal protein L16 0.02 Archaeplastida
Solyc05g045840.1.1 No alias 60S ribosomal protein L16, mitochondrial OS=Arabidopsis... 0.06 Archaeplastida
Solyc09g015860.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP Neighborhood
CC GO:0031360 intrinsic component of thylakoid membrane IEP Neighborhood
CC GO:0031361 integral component of thylakoid membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 1 128
No external refs found!