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  5. AMTR_s00015p00258950

AMTR_s00015p00258950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00015.125

Description : Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00015p00258950
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.06 Archaeplastida
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
GSVIVT01034953001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Gb_06545 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.05 Archaeplastida
Gb_08958 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
Solyc11g073230.1.1 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.05 Archaeplastida
Zm00001e028030_P001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 78 127
IPR002885 Pentatricopeptide_repeat 145 176
IPR002885 Pentatricopeptide_repeat 40 72
No external refs found!