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  5. Smo422725

Smo422725


Description : Cell cycle.interphase.DNA replication.elongation.DNA polymerase alpha complex.POLA1 catalytic component


Gene families : OG0005637 (Archaeplastida) Phylogenetic Tree(s): OG0005637_tree ,
OG_05_0006502 (LandPlants) Phylogenetic Tree(s): OG_05_0006502_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo422725
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00221560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
AT5G67100 ICU2 DNA-directed DNA polymerases 0.02 Archaeplastida
Cpa|evm.model.tig00000237.42 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 Archaeplastida
Cre04.g214350 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.03 Archaeplastida
GSVIVT01022113001 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.06 Archaeplastida
LOC_Os01g64820.1 No alias catalytic component POLA1 of DNA polymerase alpha complex 0.03 Archaeplastida
MA_242082g0010 No alias catalytic component POLA1 of DNA polymerase alpha complex 0.05 Archaeplastida
MA_3471g0020 No alias DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.03 Archaeplastida
Mp7g03960.1 No alias catalytic component POLA1 of DNA polymerase alpha complex 0.04 Archaeplastida
Solyc02g093300.3.1 No alias catalytic component POLA1 of DNA polymerase alpha complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004055 argininosuccinate synthase activity IEP Neighborhood
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 686 809
No external refs found!