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  5. Smo438605

Smo438605


Description : Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001770 (Archaeplastida) Phylogenetic Tree(s): OG0001770_tree ,
OG_05_0001246 (LandPlants) Phylogenetic Tree(s): OG_05_0001246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo438605
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00085440 evm_27.TU.AmTr_v1... Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G48570 No alias zinc finger (Ran-binding) family protein 0.03 Archaeplastida
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os03g50430.1 No alias RNA editing factor (OZ-type) 0.06 Archaeplastida
LOC_Os07g22024.1 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
Solyc03g118680.3.1 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 394 423
No external refs found!