Solyc01g111140.3.1

Description : light-dependent circadian clock regulator (XCT)

Gene families : OG0004715 (Archaeplastida) Phylogenetic Tree(s): OG0004715_tree ,
OG_05_0005034 (LandPlants) Phylogenetic Tree(s): OG_05_0005034_tree ,
OG_06_0005166 (SeedPlants) Phylogenetic Tree(s): OG_06_0005166_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g111140.3.1
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01024083001	No alias	Multi-process regulation.circadian clock.XCT...	0.05	Archaeplastida
Zm00001e010242_P001	No alias	light-dependent circadian clock regulator (XCT)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
CC	GO:0005685	U1 snRNP	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006376	mRNA splice site selection	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood
CC	GO:0097525	spliceosomal snRNP complex	IEP	Neighborhood
CC	GO:0120114	Sm-like protein family complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007005	XAP5	90	332

External Links

No external refs found!