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  5. Solyc02g083900.3.1

Solyc02g083900.3.1


Description : component TRA1 of SAGA transcription co-activator complex. protein kinase (PIKK)


Gene families : OG0001726 (Archaeplastida) Phylogenetic Tree(s): OG0001726_tree ,
OG_05_0002263 (LandPlants) Phylogenetic Tree(s): OG_05_0002263_tree ,
OG_06_0001755 (SeedPlants) Phylogenetic Tree(s): OG_06_0001755_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g083900.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00268p00010890 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
AMTR_s00268p00016240 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.atypical kinase... 0.04 Archaeplastida
AMTR_s03799p00000720 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT2G17930 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.14 Archaeplastida
AT4G36080 No alias phosphotransferases, alcohol group as... 0.13 Archaeplastida
Cpa|evm.model.tig00021537.68 No alias No description available 0.03 Archaeplastida
Cre02.g088750 No alias Protein modification.phosphorylation.atypical kinase... 0.06 Archaeplastida
GSVIVT01018783001 No alias Protein modification.phosphorylation.atypical kinase... 0.12 Archaeplastida
LOC_Os07g45064.1 No alias component TRA1 of SAGA transcription co-activator... 0.04 Archaeplastida
LOC_Os07g45070.1 No alias component TRA1 of SAGA transcription co-activator complex 0.05 Archaeplastida
LOC_Os07g45074.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_100706g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10427352g0010 No alias component TRA1 of SAGA transcription co-activator complex 0.08 Archaeplastida
MA_10427352g0020 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10432279g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_487702g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g23620.1 No alias component TRA1 of SAGA transcription co-activator... 0.09 Archaeplastida
Pp3c17_20000V3.1 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.1 Archaeplastida
Zm00001e035713_P005 No alias component TRA1 of SAGA transcription co-activator... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003152 FATC_dom 3882 3913
IPR003151 PIK-rel_kinase_FAT 2827 3165
IPR000403 PI3/4_kinase_cat_dom 3579 3825
No external refs found!