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  5. Solyc03g019780.4.1

Solyc03g019780.4.1


Description : component RPSa of SSU proteome


Gene families : OG0002241 (Archaeplastida) Phylogenetic Tree(s): OG0002241_tree ,
OG_05_0002670 (LandPlants) Phylogenetic Tree(s): OG_05_0002670_tree ,
OG_06_0002731 (SeedPlants) Phylogenetic Tree(s): OG_06_0002731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g019780.4.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00244660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
AMTR_s00041p00084080 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.38 Archaeplastida
AT3G04770 RPSAb 40s ribosomal protein SA B 0.08 Archaeplastida
Cre10.g432800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
GSVIVT01016695001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 Archaeplastida
Gb_02349 No alias component RPSa of SSU proteome 0.05 Archaeplastida
Gb_10091 No alias component RPSa of SSU proteome 0.06 Archaeplastida
LOC_Os03g08440.1 No alias component RPSa of SSU proteome 0.07 Archaeplastida
LOC_Os07g42450.1 No alias component RPSa of SSU proteome 0.21 Archaeplastida
MA_10436984g0020 No alias component RPSa of SSU proteome 0.12 Archaeplastida
MA_112104g0010 No alias component RPSa of SSU proteome 0.23 Archaeplastida
MA_6868827g0010 No alias No annotation 0.03 Archaeplastida
Mp2g26290.1 No alias component RPSa of SSU proteome 0.42 Archaeplastida
Pp3c14_15680V3.1 No alias 40s ribosomal protein SA B 0.02 Archaeplastida
Pp3c14_15700V3.1 No alias 40s ribosomal protein SA B 0.19 Archaeplastida
Pp3c14_17310V3.1 No alias 40s ribosomal protein SA B 0.2 Archaeplastida
Pp3c17_17600V3.1 No alias 40s ribosomal protein SA 0.3 Archaeplastida
Pp3c1_24120V3.1 No alias 40s ribosomal protein SA 0.13 Archaeplastida
Zm00001e000273_P001 No alias component RPSa of SSU proteome 0.29 Archaeplastida
Zm00001e010780_P001 No alias component RPSa of SSU proteome 0.3 Archaeplastida
Zm00001e038859_P001 No alias component RPSa of SSU proteome 0.29 Archaeplastida
Zm00001e038860_P002 No alias component RPSa of SSU proteome 0.02 Archaeplastida
Zm00001e038933_P001 No alias component RPSa of SSU proteome 0.36 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 21 116
IPR001865 Ribosomal_S2 119 185
No external refs found!