1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g097900.3.1

Solyc03g097900.3.1


Description : component RPS3a of SSU proteome


Gene families : OG0001983 (Archaeplastida) Phylogenetic Tree(s): OG0001983_tree ,
OG_05_0001683 (LandPlants) Phylogenetic Tree(s): OG_05_0001683_tree ,
OG_06_0002405 (SeedPlants) Phylogenetic Tree(s): OG_06_0002405_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g097900.3.1
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
AMTR_s00026p00042160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
AT3G04840 No alias Ribosomal protein S3Ae 0.32 Archaeplastida
AT4G34670 No alias Ribosomal protein S3Ae 0.24 Archaeplastida
Cpa|evm.model.tig00020710.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Cre13.g568650 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
GSVIVT01018024001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
GSVIVT01021836001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
Gb_02289 No alias component RPS3a of SSU proteome 0.14 Archaeplastida
LOC_Os02g18550.1 No alias component RPS3a of SSU proteome 0.16 Archaeplastida
LOC_Os03g10340.1 No alias component RPS3a of SSU proteome 0.17 Archaeplastida
LOC_Os12g21798.1 No alias component RPS3a of SSU proteome 0.17 Archaeplastida
MA_124901g0010 No alias component RPS3a of SSU proteome 0.11 Archaeplastida
MA_31004g0010 No alias component RPS3a of SSU proteome 0.16 Archaeplastida
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.3 Archaeplastida
Pp3c11_17260V3.1 No alias Ribosomal protein S3Ae 0.16 Archaeplastida
Pp3c12_18590V3.1 No alias Ribosomal protein S3Ae 0.05 Archaeplastida
Pp3c18_2090V3.1 No alias Ribosomal protein S3Ae 0.23 Archaeplastida
Pp3c21_21510V3.1 No alias Ribosomal protein S3Ae 0.31 Archaeplastida
Pp3c22_18300V3.1 No alias Ribosomal protein S3Ae 0.13 Archaeplastida
Pp3c4_14160V3.1 No alias Ribosomal protein S3Ae 0.19 Archaeplastida
Smo160008 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Smo271906 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Smo271907 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Zm00001e000767_P001 No alias No annotation 0.12 Archaeplastida
Zm00001e038777_P001 No alias component RPS3a of SSU proteome 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 16 221
No external refs found!