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  5. Solyc03g111050.3.1

Solyc03g111050.3.1


Description : PAP3/TAC10 cofactor of plastid-encoded RNA polymerase


Gene families : OG0004975 (Archaeplastida) Phylogenetic Tree(s): OG0004975_tree ,
OG_05_0004978 (LandPlants) Phylogenetic Tree(s): OG_05_0004978_tree ,
OG_06_0004361 (SeedPlants) Phylogenetic Tree(s): OG_06_0004361_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g111050.3.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00203240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 Archaeplastida
AMTR_s00354p00009120 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 Archaeplastida
AT3G48500 PTAC10, PDE312 Nucleic acid-binding, OB-fold-like protein 0.2 Archaeplastida
Cre07.g348500 No alias No description available 0.02 Archaeplastida
GSVIVT01008490001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.11 Archaeplastida
Gb_30753 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida
Gb_30755 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_30756 No alias no hits & (original description: none) 0.11 Archaeplastida
LOC_Os01g67570.1 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.2 Archaeplastida
MA_10428299g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10435142g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_14025g0020 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.06 Archaeplastida
Mp4g08250.1 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.13 Archaeplastida
Pp3c18_13570V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.16 Archaeplastida
Smo438805 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 Archaeplastida
Zm00001e028549_P001 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.15 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!