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Description : Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica (sp|a3abe1|ppr5_orysj : 606.0)
Gene families : OG0000306 (Archaeplastida) Phylogenetic Tree(s): OG0000306_tree ,
OG_05_0007143 (LandPlants) Phylogenetic Tree(s): OG_05_0007143_tree ,
OG_06_0009674 (SeedPlants) Phylogenetic Tree(s): OG_06_0009674_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc04g054270.4.1 | |
| Cluster | HCCA: Cluster_119 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00045p00075400 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g06430,... | 0.03 | Archaeplastida | |
| AT3G06430 | EMB2750 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
| AT3G46870 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.01 | Archaeplastida | |
| AT3G53170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
| AT4G39620 | EMB2453, ATPPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.16 | Archaeplastida | |
| AT5G48730 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
| Cpa|evm.model.tig00001623.10 | No alias | Pentatricopeptide repeat-containing protein At5g04810,... | 0.01 | Archaeplastida | |
| Cpa|evm.model.tig00021435.54 | No alias | No description available | 0.02 | Archaeplastida | |
| GSVIVT01017677001 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.09 | Archaeplastida | |
| GSVIVT01022204001 | No alias | Pentatricopeptide repeat-containing protein At4g39620,... | 0.07 | Archaeplastida | |
| GSVIVT01032162001 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.03 | Archaeplastida | |
| Gb_00230 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.11 | Archaeplastida | |
| Gb_18843 | No alias | Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... | 0.03 | Archaeplastida | |
| Gb_18854 | No alias | Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... | 0.03 | Archaeplastida | |
| Gb_36199 | No alias | Pentatricopeptide repeat-containing protein At4g39620,... | 0.07 | Archaeplastida | |
| LOC_Os02g51480.1 | No alias | Pentatricopeptide repeat-containing protein PPR5... | 0.02 | Archaeplastida | |
| LOC_Os03g02430.1 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.08 | Archaeplastida | |
| LOC_Os04g39970.1 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| LOC_Os06g07550.1 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.06 | Archaeplastida | |
| MA_10431478g0010 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.02 | Archaeplastida | |
| MA_12518g0010 | No alias | Pentatricopeptide repeat-containing protein PPR5... | 0.02 | Archaeplastida | |
| MA_793801g0010 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.02 | Archaeplastida | |
| MA_946756g0010 | No alias | Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... | 0.02 | Archaeplastida | |
| Mp1g15120.1 | No alias | Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... | 0.02 | Archaeplastida | |
| Pp3c20_15110V3.1 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
| Pp3c4_14490V3.1 | No alias | plastid transcriptionally active 2 | 0.02 | Archaeplastida | |
| Pp3c8_13830V3.1 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c8_4580V3.1 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | Archaeplastida | |
| Smo119487 | No alias | Pentatricopeptide repeat-containing protein At1g19720... | 0.01 | Archaeplastida | |
| Zm00001e000106_P001 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.01 | Archaeplastida | |
| Zm00001e023883_P001 | No alias | Pentatricopeptide repeat-containing protein PPR5,... | 0.1 | Archaeplastida | |
| Zm00001e031052_P001 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
| MF | GO:0004784 | superoxide dismutase activity | IEP | Neighborhood |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
| MF | GO:0004832 | valine-tRNA ligase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
| BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006801 | superoxide metabolic process | IEP | Neighborhood |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
| BP | GO:0008104 | protein localization | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
| BP | GO:0015031 | protein transport | IEP | Neighborhood |
| BP | GO:0015833 | peptide transport | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Neighborhood |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0016874 | ligase activity | IEP | Neighborhood |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0042886 | amide transport | IEP | Neighborhood |
| BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
| BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
| BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| No external refs found! |